View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_10 (Length: 454)
Name: NF4094_low_10
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Complemental strand, 31476756 - 31476328
Alignment:
| Q |
12 |
acagaggttgagataatccaaagctggatnnnnnnntattatgatgaagttaatatataatatgggggatgtgtttgttagtttttggaaacatggcact |
111 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31476756 |
acagaggttgagataatccaaagctggataaaaaaatattatgatgaagttaatatataatatgggggatgtgtttgttagtttttggaaacatggcact |
31476657 |
T |
|
| Q |
112 |
taaataaattatcctactcagatttattttgtgcatgtaacatcccaagatttatttatgaattaatctttattatcttactgcttagatttattttgtn |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31476656 |
taaataaattatcctactcagatttattttgctcatgtaacatcccaagaattatttatgaattaatctttattatcttactccttagatttattttgta |
31476557 |
T |
|
| Q |
212 |
nnnnnnnntagttcattagtagttgaaccttaattacgttgctaaccaaaagaaaactagggatgaaggagctaaagaagaacaagaggaaaattggaac |
311 |
Q |
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| T |
31476556 |
aaaaaaaatagttcattagtagttgaaccttaattacgttgctaaccaaaagaaaactagggatgaaggagctaaagaagaacaagaggaaaattggaac |
31476457 |
T |
|
| Q |
312 |
aaatcaagggt--cacaattgagtcaaatctttcctctttctcagtttctctatcaatatcaagagtaaattcagtattaagttatgattttgggatggc |
409 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31476456 |
aaatcaagggtttcacaattgagtcaaatctttcctctttctcagtttctctatcaatatcaagagtaaattcagtattaagttatgattttgggatggc |
31476357 |
T |
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| Q |
410 |
aatcagtaaaagatgaaccctaggggctg |
438 |
Q |
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| T |
31476356 |
aatcagtaaaagatgaaccctaggggctg |
31476328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 433
Target Start/End: Original strand, 31468082 - 31468493
Alignment:
| Q |
12 |
acagaggttgagataatccaaagctggatnnnnnnntattatgatgaagttaatatataatatgggggatgtgtttgttagtttttggaaacatggcact |
111 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||| |
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| T |
31468082 |
acagaggttcagataatccaaagctggataaaagaatattatgatgaagttaatatataatattggggatgt--ttgttaatttttggaaagatggcact |
31468179 |
T |
|
| Q |
112 |
taaataaattatcctactc---agatttattttgtgcatgtaacatcccaagatttatttatgaattaatctttattatcttactgcttagatttatttt |
208 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
31468180 |
taaataaattatcctactccttagatttattttgttcatgtaacatcccaagaattatttatgaattaatctttattatcttaatccttagacttatttt |
31468279 |
T |
|
| Q |
209 |
gtnnnnnnnnntagttcattagtagttgaaccttaattacgttgctaaccaaaagaaaactagggatgaaggagctaaagaagaacaagaggaaaattgg |
308 |
Q |
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| T |
31468280 |
gt-aaaataaatagttgattagtagttgaaccttaattacgttgctaaccaaaagaaaactagggatgaaagagctaaagaagaacaagaggaaaattgg |
31468378 |
T |
|
| Q |
309 |
aacaaatcaaggg--tcacaattgagtcaaatctttcctctttctcagtttctctatcaatatcaagagtaaattcagtattaagttatgattttgggat |
406 |
Q |
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| T |
31468379 |
aacaaatcaagggtttcaca----agtcaaacatttcctctttctca--------ctcaatagcaagagtaaattccttattaagttatgattttgggat |
31468466 |
T |
|
| Q |
407 |
ggcaatcagtaaaagatgaaccctagg |
433 |
Q |
| |
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|| ||| |||||||||||||||||||| |
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| T |
31468467 |
gggaattagtaaaagatgaaccctagg |
31468493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 31466844 - 31467092
Alignment:
| Q |
12 |
acagaggttgagataatccaaagctggatnnnnnnntattatgatgaagttaatatataatatgggggatgtgtttgttagtttttggaaacatggcact |
111 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| | ||||| ||| |||||||| |
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| T |
31466844 |
acagaggttgagataatccaaagctggataatacaatattatgat-------atatataatatgggggatatgtttgtaaatttttacaaagatggcact |
31466936 |
T |
|
| Q |
112 |
taaataaattatcctactcagatttattttgtgcatgtaacatcccaagatttatttatgaattaatctttattatcttactgcttagatttattttgtn |
211 |
Q |
| |
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||||||| |||||| | ||| || ||||| ||||||||||||||| |||||||| |||||||||||||||||||||| || |||||||||||| |
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| T |
31466937 |
taaataagttatccca---agaattcttttggtactgtaacatcccaagaattatttatcaattaatctttattatcttactcctatgatttattttgt- |
31467032 |
T |
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| Q |
212 |
nnnnnnnntagttcattagtagttgaaccttaattacgttgctaaccaaaagaaaactag |
271 |
Q |
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| T |
31467033 |
aaaaaaaatagttgattagtagttgaaccttaattacgttggtaaccaaaagaaaactag |
31467092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 404
Target Start/End: Original strand, 31467091 - 31467203
Alignment:
| Q |
296 |
agaggaaaattggaacaaatcaagggt--cacaa--ttgagtcaaatctttcctctttctcagtttctctatcaatatcaagagtaaattcagtattaag |
391 |
Q |
| |
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|||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
31467091 |
agaggaaacttggaacaaatcaagggtttcacaaatttgagtcaaatctttcctctttctcactttctccatcaatagcaagagtaaattcagtattaag |
31467190 |
T |
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| Q |
392 |
ttatgattttggg |
404 |
Q |
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||||||||||||| |
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| T |
31467191 |
ttatgattttggg |
31467203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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