View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_11 (Length: 453)
Name: NF4094_low_11
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 12569196 - 12568761
Alignment:
| Q |
1 |
ctgattaatccacatagaattcaaagcaatcctcgggatacaacgatcctctaaattgatcaaactggatatcaagtctcaaagctttagttatcttacc |
100 |
Q |
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| T |
12569196 |
ctgattaatccacatagaattcaaagcaatcgtcgggatacaaagatcctctaaattgatcaagttgaatatcaagtctcaaagcttt-gttatcttagg |
12569098 |
T |
|
| Q |
101 |
tgtagaatgatcttctaaagtacaatgatatgattctctaaaaaagctaggcataaaaaagagatcatgttcaaacaaatgcaaacaattatatagtaca |
200 |
Q |
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| T |
12569097 |
tgtagaatgatcttctaaagtacaatgatatgattctctaaaaaagctagggataaaaaagagatcatgttcaaacaaatgcaaacaatcatgtagtaca |
12568998 |
T |
|
| Q |
201 |
tattgttcaatctatccaatgactatttgtaccatatttcatgctctggctcacttttatgtgcaggaagttgtggaagagatgaaacggttgaacatat |
300 |
Q |
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| T |
12568997 |
tattgttcaatctatccaatgactatttgtaccatatttcatactctggctcacttttatgtgcacgaggttgtggaagagatgaaacggttgaatatat |
12568898 |
T |
|
| Q |
301 |
attttttgaatatgaatttttagaaatatttagatccacgttctaaattggcctgatatacatgtc-ttgtgttattctttgttattcttcaaaacatga |
399 |
Q |
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| T |
12568897 |
attttttgaatgtgaatttttagaaatatttagatccacgttctaaattggcctgatatatatatctttgtgttattctttgttattcttcaaaacatga |
12568798 |
T |
|
| Q |
400 |
tttgcaatttttcactgtgaaatttatggtagacatt |
436 |
Q |
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| T |
12568797 |
tctgcaatttttcactgtgaaatttatggtagacatt |
12568761 |
T |
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