View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_16 (Length: 396)
Name: NF4094_low_16
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 84 - 396
Target Start/End: Complemental strand, 30246317 - 30246005
Alignment:
| Q |
84 |
actaacctcaagatattgtcgataggttacaccattctgcctctgcataatcccacagactactgctgtcaagaagaccaaggagagagggaaagaggaa |
183 |
Q |
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| T |
30246317 |
actaacctcaagatattgtcgataggttgcaccattctgcctctgcataatcccacagactactgctgtcaagaagaccaaggagagagggaaagaagaa |
30246218 |
T |
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| Q |
184 |
attcaacaatgtcttctaacttgggaaagaggtgagagagggatgacgacaaaaaggggtatacctacaatggaaaggatgctctccatttcctacatta |
283 |
Q |
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| T |
30246217 |
attcaacaatgtcttctaacttgggaaagaggtgagagagggatgacgacaaaaaggggtatatctacaatggaacggatgatctccatttcctccatta |
30246118 |
T |
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| Q |
284 |
ttatagttttaagaatacaaacatgacagtgtgacacctagcttagctctgcctctgccctcagtttgattttgaacaagttcttgttgattaattccat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30246117 |
ctatagttttaagaatacaaacatgacagtgtgacacctagcttagctctgcctctgccctcagtttaattttgaacaagttcttgttgattaattccat |
30246018 |
T |
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| Q |
384 |
gtgttcccttctt |
396 |
Q |
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||||||||||||| |
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| T |
30246017 |
gtgttcccttctt |
30246005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 30246678 - 30246609
Alignment:
| Q |
20 |
agtggctccattgtcgagctgttatcatcacatacggtggatgtttggtgtaggtcaggtcatgactaac |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30246678 |
agtggctccattgtcgagctgttatcatcacatacggtggatgtttggtgtaggtcaggtcatgactaac |
30246609 |
T |
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