View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4094_low_2 (Length: 618)

Name: NF4094_low_2
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4094_low_2
NF4094_low_2
[»] chr1 (5 HSPs)
chr1 (19-618)||(34423173-34423772)
chr1 (547-612)||(3167630-3167695)
chr1 (547-599)||(34423126-34423178)
chr1 (547-603)||(11558332-11558388)
chr1 (548-599)||(11558442-11558493)
[»] chr3 (3 HSPs)
chr3 (562-605)||(23314735-23314778)
chr3 (550-613)||(23314668-23314731)
chr3 (566-604)||(54881641-54881679)
[»] chr5 (1 HSPs)
chr5 (560-606)||(32061418-32061464)
[»] chr4 (2 HSPs)
chr4 (565-605)||(28767947-28767987)
chr4 (564-605)||(23575646-23575687)
[»] chr8 (1 HSPs)
chr8 (563-606)||(29818295-29818338)
[»] chr7 (1 HSPs)
chr7 (566-606)||(23217945-23217985)


Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Complemental strand, 34423772 - 34423173
Alignment:
Q  19 agggtgttgattgataaaagattctaggtgctt-aatcaaattgcagggtaccatgtttacactttaacaaataaactgctactactatacattagccac 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34423772 agggtgttgattgataaaagattctaggtgctttaatcaaattgcagggtaccatgtttacactttaacaaataaactgctactactatacattagccac 34423673  T
Q  118 agaaggttctcatcgtacaacagaatagacctgcaatgggttcaaccttccctagactctgccatataagctttgtagcactatttattaagcaattcat 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34423672 agaaggttctcatcatacaacagaatagacctgcaatgggttcaaccttccctagactctgccatataagctttgtagcactattcattaagcaattcat 34423573  T
Q  218 cattaacagtcgttgatatcatcattcaaaagcaaagcaacgttctgagagctcatttgaatgcatgaatagtttttaatgcagaaatgagaactacagg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34423572 cattaacagtcgttgatatcatcattcaaaagcaaagcaacgttctgagagctcatttgaatgcatgaatagtttttaatgcagaaatgagaactacagg 34423473  T
Q  318 ttataggttcccatgtagctccaaaatttacatcacttaaaattacatttcatattgtaggagggtgaggacgcaaatgatgaaaaggatcacatcagct 417  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34423472 ttataggttcccatgtagctccaaaatttacaccacttaaaattacatttcatattgtagga-ggtgaggacgcaaatgatgaaaaggatcacatcagct 34423374  T
Q  418 ttaaaataaagtattacaagagatctttttaacaaattaaaagtccgatcattttgctaaaataaactatgaaaactaagaatctacaagaccatgatat 517  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34423373 ataaaataaagtattacaagagatctttttaacaaattaaaagtccgatcattttgctaaaataaactatgaaaactaagaatctacaagaccgtgatat 34423274  T
Q  518 tcatatcccaaaatcagagtctaaaagactactccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgtatttggtcgaaaattacat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34423273 tcatatcccaaaatcagagtctaaaagactactccctctagccttaattataagcaaaagtaggtcaaaaaaagttgatgtatttggtcgaaaattacat 34423174  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 547 - 612
Target Start/End: Complemental strand, 3167695 - 3167630
Alignment:
Q  547 tactccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgtatttggtcgaaaat 612  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  3167695 tactccctgtggcctaaattataagcaaaagtaggtcaaagaaagttgatgaatttggtccaaaat 3167630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 547 - 599
Target Start/End: Original strand, 34423126 - 34423178
Alignment:
Q  547 tactccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgta 599  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  34423126 tactccatctggccttaattataagcaaaagtaggtcaaagaaagttgatgta 34423178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 547 - 603
Target Start/End: Original strand, 11558332 - 11558388
Alignment:
Q  547 tactccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgtatttg 603  Q
    ||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||    
T  11558332 tactccctccagactttattgtaagcaaaagtaggtcaaagaaagttgatgtatttg 11558388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 11558493 - 11558442
Alignment:
Q  548 actccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgta 599  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| | ||||||    
T  11558493 actccctctggccttaattataagcaaaactaggtcaaagaaaatcgatgta 11558442  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 562 - 605
Target Start/End: Complemental strand, 23314778 - 23314735
Alignment:
Q  562 taattataagcaaaagtaggtcaaagaaagttgatgtatttggt 605  Q
    |||||||||||||||||||||||||||||| | |||||||||||    
T  23314778 taattataagcaaaagtaggtcaaagaaaggtaatgtatttggt 23314735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 550 - 613
Target Start/End: Original strand, 23314668 - 23314731
Alignment:
Q  550 tccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgtatttggtcgaaaatt 613  Q
    ||||||| || || ||||||||||||||| ||||||||||||||||| || || ||| ||||||    
T  23314668 tccctctggcattgattataagcaaaagttggtcaaagaaagttgatatactttgtccaaaatt 23314731  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 604
Target Start/End: Complemental strand, 54881679 - 54881641
Alignment:
Q  566 tataagcaaaagtaggtcaaagaaagttgatgtatttgg 604  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  54881679 tataaacaaaagtaagtcaaagaaagttgatgtatttgg 54881641  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 606
Target Start/End: Original strand, 32061418 - 32061464
Alignment:
Q  560 cttaattataagcaaaagtaggtcaaagaaagttgatgtatttggtc 606  Q
    ||||| |||||| |||||| |||||||||||||||||||||||||||    
T  32061418 cttaaatataagtaaaagttggtcaaagaaagttgatgtatttggtc 32061464  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 605
Target Start/End: Original strand, 28767947 - 28767987
Alignment:
Q  565 ttataagcaaaagtaggtcaaagaaagttgatgtatttggt 605  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  28767947 ttataagcaaaaatgggtcaaagaaagttgatgtatttggt 28767987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 605
Target Start/End: Complemental strand, 23575687 - 23575646
Alignment:
Q  564 attataagcaaaagtaggtcaaagaaagttgatgtatttggt 605  Q
    |||||||| |||| || |||||||||||||||||||||||||    
T  23575687 attataagaaaaaatatgtcaaagaaagttgatgtatttggt 23575646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 606
Target Start/End: Original strand, 29818295 - 29818338
Alignment:
Q  563 aattataagcaaaagtaggtcaaagaaagttgatgtatttggtc 606  Q
    ||||||| |||||| | |||||||||||||||||||||||||||    
T  29818295 aattataggcaaaaatgggtcaaagaaagttgatgtatttggtc 29818338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 606
Target Start/End: Complemental strand, 23217985 - 23217945
Alignment:
Q  566 tataagcaaaagtaggtcaaagaaagttgatgtatttggtc 606  Q
    ||||||||||||| |||||||||| ||| ||||||||||||    
T  23217985 tataagcaaaagtcggtcaaagaaggtttatgtatttggtc 23217945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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