View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4094_low_20 (Length: 358)
Name: NF4094_low_20
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 10342359 - 10342681
Alignment:
| Q |
18 |
agatgatgctatatgttgcagcatattgcatttttgttcatacatccaatgtggtgttacagaaagtttcaagaaagtagtatttgtacaaagaggtgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10342359 |
agatgatgctatatgttgcagcatattgcatttttgttcatacatccaatgtggtgttacagaaagtttcaagaaattagtatttgtacaaagaggtgtg |
10342458 |
T |
|
| Q |
118 |
tggaaacaagatcagtttatatcatgaaaacatgttcagatttgtactgtataaaataaaatatatattctcttaccaaatattaaggaaaaagtctatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
10342459 |
tggaaacaagatcagtttatatcatgaaaacatgttcagatttgtactgt-----ataaaatatatattctctaaccaaatattgaggaataagtctatg |
10342553 |
T |
|
| Q |
218 |
ctttgaattggaatatcttcttccatacgtgaaatacagtaaaaactgta-----tatattaattgtgtgaaactgtggatacactgtatcttcaatctg |
312 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10342554 |
ctttgaattggaatatcttcatccatacgtgaaatacagtaaaaactgtatatattatattaattgtgtgaaactgtggatacactgtatcttcaatctg |
10342653 |
T |
|
| Q |
313 |
attatattctaattgcatttctaagaac |
340 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10342654 |
attatattctaattgcatttctaagaac |
10342681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University