View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_24 (Length: 349)
Name: NF4094_low_24
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 32224782 - 32225090
Alignment:
| Q |
17 |
aaaaatgctgttggaggcttatttaagaaatgaaacatcactgatttcactttagcatcttgtgattaattaattaat--------aaggatactaaact |
108 |
Q |
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| T |
32224782 |
aaaaatgctgttggaggcttatttaagaaatgaaacatcactgatttcactttagcatcctgtgattaattaattaattaattaataaggatactaaact |
32224881 |
T |
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| Q |
109 |
tgtcatccattcaagtatgtgtataagttagcactgtgtatcttatcatataaactataggataggatatactaagttagcactgtctgataatggatcc |
208 |
Q |
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| T |
32224882 |
tgtcatcccttcaagtatgtgtataagttagcactgtgtatcttatcatataaactataggataggatatactaagtt----------------ggatcc |
32224965 |
T |
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| Q |
209 |
aatatatgtaaggtaactgagctctgctcttcactttactgatcctgcctctgattgtttatgtttttcctaattctgttgcatatttattattattcaa |
308 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32224966 |
aatat--gtaaggtaacagagctctgctcttcactttactgatcctgcctctgattgtttatgtttttcctaattctgttgcatat---ttattattcaa |
32225060 |
T |
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| Q |
309 |
ttctgtttcctttctcttattttgttctct |
338 |
Q |
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| T |
32225061 |
ttctgtttcctttctcttattttgttctct |
32225090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 85 - 338
Target Start/End: Original strand, 32229703 - 32229935
Alignment:
| Q |
85 |
attaattaataaggatactaaacttgtcatccattcaa---gtat-gtgtataagttagcactgtgtatcttatcatataaactataggataggatatac |
180 |
Q |
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| T |
32229703 |
attaattaataaggacactaaacttgccatcccttttaagagtattgtgtataagttagcactgtgtatcttatcatataatctataggataggatatac |
32229802 |
T |
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| Q |
181 |
taagttagcactgtctgataatggatccaatatatgtaaggtaactgagctctgctcttcactttactgatcctgcctctgattgtttatgtttttccta |
280 |
Q |
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| T |
32229803 |
taagtt----------------ggatccaatat--gtaaggtaacagagttatgctctttactttactgatcctgcctc----tgtttatatttttctta |
32229880 |
T |
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| Q |
281 |
attctgttgcatatttattattattcaattctgtttcctttctcttattttgttctct |
338 |
Q |
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| T |
32229881 |
attctgttgcatat---atattattcaattctgtttcctttctcgtattttcttctct |
32229935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 32210753 - 32210781
Alignment:
| Q |
263 |
ttgtttatgtttttcctaattctgttgca |
291 |
Q |
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| T |
32210753 |
ttgtttatgtttttcctaattctgttgca |
32210781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 32220388 - 32220424
Alignment:
| Q |
147 |
tatcttatcatataaactataggataggatatactaa |
183 |
Q |
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| T |
32220388 |
tatcttatcatgtaatctataggataggatatactaa |
32220424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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