View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4094_low_27 (Length: 312)

Name: NF4094_low_27
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4094_low_27
NF4094_low_27
[»] chr8 (3 HSPs)
chr8 (17-312)||(2445947-2446248)
chr8 (61-104)||(8448082-8448125)
chr8 (61-140)||(5919768-5919845)
[»] chr7 (3 HSPs)
chr7 (64-132)||(44533742-44533810)
chr7 (67-140)||(7282224-7282296)
chr7 (61-114)||(25436993-25437046)
[»] chr3 (5 HSPs)
chr3 (85-166)||(31750973-31751052)
chr3 (60-114)||(35731988-35732042)
chr3 (63-121)||(45506373-45506431)
chr3 (79-150)||(35220585-35220655)
chr3 (65-122)||(6954252-6954309)
[»] chr5 (1 HSPs)
chr5 (65-108)||(25876203-25876246)
[»] chr1 (3 HSPs)
chr1 (133-165)||(16087051-16087083)
chr1 (63-110)||(30026963-30027010)
chr1 (65-109)||(51536670-51536714)
[»] chr2 (2 HSPs)
chr2 (138-169)||(9253195-9253226)
chr2 (66-109)||(34314599-34314642)
[»] chr6 (1 HSPs)
chr6 (85-167)||(34493613-34493695)
[»] chr4 (1 HSPs)
chr4 (137-165)||(23963051-23963079)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 2445947 - 2446248
Alignment:
Q  17 atataaaaaagatgaattactaaaattgaaaa-catagtaataaataggcaaaattacactcgtcgtcgcttaacttaattttagataacgattttgtca 115  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2445947 atataaaaaagataaattactaaaattgaaaaacgtagtaataaatatgcaaaattacactcgtcgtcgcttaacttaatttcagataacgattttgtca 2446046  T
Q  116 cttatctaatttttcacatcattttggttcatttgcatatgaattttcaagcatgagttacttgatggtccatttaatcagacttgagagattagtcgtt 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2446047 cttatctaatttttcacatcattttagttcatttgcatatgaattttcaagcatgagttgcttgatggtccatttaatcagacttgagagattagtcgtt 2446146  T
Q  216 gaagcttacataaatatacctaacttcaaagtcaagtaattgaac-----tgattaatgaattaacaaaacatatatagaattgaggtcgatcaagggat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  2446147 gaagcttacataaatatacctaacttcaaagtcaagtaattgaactcgaatgattaatgaactaacaaaacatatatagaattgaggtcgatgaagggat 2446246  T
Q  311 gt 312  Q
    ||    
T  2446247 gt 2446248  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 8448125 - 8448082
Alignment:
Q  61 taggcaaaattacactcgtcgtcgcttaacttaattttagataa 104  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  8448125 taggcaaaattacactcgtcgtctcttaacttaattttagataa 8448082  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 5919845 - 5919768
Alignment:
Q  61 taggcaaaattacactcgtcgtcgcttaacttaattttagataacgattttgtcacttatctaatttttcacatcatttt 140  Q
    |||||||||||||  ||| |||| ||||||||||||||| ||||| ||||  ||| ||||||  |||||||| |||||||    
T  5919845 taggcaaaattactttcggcgtctcttaacttaattttaaataacaatttcctcaattatct--tttttcacctcatttt 5919768  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 44533810 - 44533742
Alignment:
Q  64 gcaaaattacactcgtcgtcgcttaacttaattttagataacgattttgtcacttatctaatttttcac 132  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||  ||||||  ||||||||    
T  44533810 gcaaaattacactcgtcgtcccttaacttaatttcagataaccattttgtcctttatcttttttttcac 44533742  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 7282296 - 7282224
Alignment:
Q  67 aaattacactcgtcgtcgcttaacttaattttagataacgattttgtcacttatctaatttttcacatcatttt 140  Q
    |||||||||| || ||| |||||||||||||  |||||| ||||||||| ||||||  |||||||| |||||||    
T  7282296 aaattacacttgttgtctcttaacttaatttctgataacaattttgtcaattatct-ttttttcacgtcatttt 7282224  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 25437046 - 25436993
Alignment:
Q  61 taggcaaaattacactcgtcgtcgcttaacttaattttagataacgattttgtc 114  Q
    |||||||||| || | ||||||| |||||||||| ||||| |||||||||||||    
T  25437046 taggcaaaatgactcccgtcgtcccttaacttaactttaggtaacgattttgtc 25436993  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 31751052 - 31750973
Alignment:
Q  85 cttaacttaattttagataacgattttgtcacttatctaatttttcacatcattttggttcatttgcatatgaattttcaag 166  Q
    |||||||||||||||  ||| |||||||||| |||| |  |||| |||||||||||| || |||||||||||||||||||||    
T  31751052 cttaacttaattttacctaatgattttgtcatttattt--ttttgcacatcattttgattaatttgcatatgaattttcaag 31750973  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 35732042 - 35731988
Alignment:
Q  60 ataggcaaaattacactcgtcgtcgcttaacttaattttagataacgattttgtc 114  Q
    |||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||    
T  35732042 ataggcaaaattactctcgttgtctcttaacttaatttcagagaacgattttgtc 35731988  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 45506431 - 45506373
Alignment:
Q  63 ggcaaaattacactcgtcgtcgcttaacttaattttagataacgattttgtcacttatc 121  Q
    |||||||||||| || |||||  ||||||||||||||||||||||||| |||| |||||    
T  45506431 ggcaaaattacattcatcgtcttttaacttaattttagataacgatttcgtcatttatc 45506373  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 35220585 - 35220655
Alignment:
Q  79 tcgtcgcttaacttaattttagataacgattttgtcacttatctaatttttcacatcattttggttcatttg 150  Q
    ||||| ||||||||||||| ||||||| |||| |||| ||||||  |||||||||||||||| |||| ||||    
T  35220585 tcgtcccttaacttaatttcagataacaatttcgtcatttatct-ttttttcacatcattttcgttcttttg 35220655  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 6954309 - 6954252
Alignment:
Q  65 caaaattacactcgtcgtcgcttaacttaattttagataacgattttgtcacttatct 122  Q
    ||||||||||||  | ||| ||||||||||||||||||||| |||| |||| ||||||    
T  6954309 caaaattacacttttagtcccttaacttaattttagataacaatttggtcatttatct 6954252  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 25876203 - 25876246
Alignment:
Q  65 caaaattacactcgtcgtcgcttaacttaattttagataacgat 108  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  25876203 caaaattacactcgtcgtcccttaacttaatttcagataacgat 25876246  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 16087051 - 16087083
Alignment:
Q  133 atcattttggttcatttgcatatgaattttcaa 165  Q
    |||||||||||||||||||||||||||||||||    
T  16087051 atcattttggttcatttgcatatgaattttcaa 16087083  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 30026963 - 30027010
Alignment:
Q  63 ggcaaaattacactcgtcgtcgcttaacttaattttagataacgattt 110  Q
    ||||||||||||| ||| ||| ||||||||||||| ||||||||||||    
T  30026963 ggcaaaattacacccgtggtcccttaacttaatttcagataacgattt 30027010  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 51536714 - 51536670
Alignment:
Q  65 caaaattacactcgtcgtcgcttaacttaattttagataacgatt 109  Q
    |||||||||| ||||||||  |||||||||||||| |||||||||    
T  51536714 caaaattacattcgtcgtcatttaacttaattttatataacgatt 51536670  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 169
Target Start/End: Original strand, 9253195 - 9253226
Alignment:
Q  138 tttggttcatttgcatatgaattttcaagcat 169  Q
    ||||||||||||||||||||||||||||||||    
T  9253195 tttggttcatttgcatatgaattttcaagcat 9253226  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 34314642 - 34314599
Alignment:
Q  66 aaaattacactcgtcgtcgcttaacttaattttagataacgatt 109  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||    
T  34314642 aaaattacactcgtcgtcggttaatttaatcttagataacgatt 34314599  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 34493613 - 34493695
Alignment:
Q  85 cttaacttaattttagataacgattttgtcacttatctaatttttcacatcattttggttcatttgcatatgaattttcaagc 167  Q
    ||||||||||||||| |||||||||  |||  |||| | ||||||||| || ||||||| | |||| ||||| ||||||||||    
T  34493613 cttaacttaattttaaataacgattccgtcttttattttatttttcacttctttttggtccgtttgaatatggattttcaagc 34493695  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 23963079 - 23963051
Alignment:
Q  137 ttttggttcatttgcatatgaattttcaa 165  Q
    |||||||||||||||||||||||||||||    
T  23963079 ttttggttcatttgcatatgaattttcaa 23963051  T

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