View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4094_low_3 (Length: 586)

Name: NF4094_low_3
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4094_low_3
NF4094_low_3
[»] chr7 (13 HSPs)
chr7 (16-565)||(8901975-8902526)
chr7 (19-182)||(2735890-2736052)
chr7 (102-191)||(43022825-43022914)
chr7 (115-182)||(43988116-43988183)
chr7 (115-182)||(44623780-44623847)
chr7 (115-169)||(33698597-33698651)
chr7 (115-169)||(45025892-45025946)
chr7 (43-168)||(31011549-31011674)
chr7 (115-181)||(7345205-7345271)
chr7 (101-187)||(38442187-38442273)
chr7 (115-188)||(21271517-21271590)
chr7 (116-189)||(35594332-35594405)
chr7 (33-88)||(37932145-37932201)
[»] chr5 (12 HSPs)
chr5 (17-191)||(35100476-35100660)
chr5 (43-182)||(12005492-12005642)
chr5 (115-191)||(28613439-28613515)
chr5 (117-190)||(6313133-6313206)
chr5 (66-170)||(24388352-24388455)
chr5 (43-113)||(23153627-23153697)
chr5 (66-170)||(24273757-24273861)
chr5 (101-182)||(24781598-24781679)
chr5 (116-188)||(34911976-34912048)
chr5 (17-100)||(6231189-6231272)
chr5 (116-170)||(8166212-8166266)
chr5 (101-159)||(35112566-35112624)
[»] chr3 (11 HSPs)
chr3 (17-187)||(48647764-48647945)
chr3 (66-182)||(12406014-12406130)
chr3 (19-188)||(25590830-25591010)
chr3 (117-188)||(41055774-41055845)
chr3 (115-188)||(6955981-6956054)
chr3 (113-192)||(41727366-41727445)
chr3 (20-190)||(50406648-50406817)
chr3 (16-170)||(41054228-41054382)
chr3 (118-182)||(2032430-2032494)
chr3 (114-188)||(43021044-43021118)
chr3 (113-182)||(330879-330948)
[»] chr6 (6 HSPs)
chr6 (26-110)||(14590177-14590261)
chr6 (16-76)||(14590271-14590331)
chr6 (33-113)||(23954223-23954303)
chr6 (43-113)||(12101178-12101248)
chr6 (114-154)||(14590123-14590163)
chr6 (108-188)||(24163421-24163501)
[»] chr1 (20 HSPs)
chr1 (19-182)||(13781394-13781555)
chr1 (117-190)||(38459142-38459215)
chr1 (115-191)||(5806649-5806725)
chr1 (117-188)||(25036074-25036145)
chr1 (117-188)||(25041286-25041357)
chr1 (116-188)||(25040220-25040292)
chr1 (119-191)||(37070962-37071034)
chr1 (101-188)||(386715-386802)
chr1 (33-192)||(4861488-4861646)
chr1 (123-188)||(10462534-10462599)
chr1 (44-113)||(46121634-46121703)
chr1 (114-158)||(6222493-6222537)
chr1 (118-190)||(37552861-37552933)
chr1 (115-182)||(3936452-3936519)
chr1 (116-190)||(35842744-35842818)
chr1 (19-109)||(35842836-35842926)
chr1 (121-190)||(9414822-9414891)
chr1 (101-182)||(23980873-23980954)
chr1 (101-181)||(33775345-33775426)
chr1 (61-154)||(38673410-38673502)
[»] chr8 (12 HSPs)
chr8 (43-191)||(11943003-11943162)
chr8 (107-191)||(13637776-13637860)
chr8 (107-191)||(13738189-13738273)
chr8 (117-191)||(42639636-42639710)
chr8 (119-182)||(39029035-39029098)
chr8 (115-182)||(17785127-17785194)
chr8 (115-190)||(39566770-39566845)
chr8 (116-186)||(2086451-2086521)
chr8 (43-113)||(40463909-40463979)
chr8 (19-100)||(2086550-2086631)
chr8 (101-188)||(24964247-24964334)
chr8 (19-142)||(30203238-30203362)
[»] chr4 (14 HSPs)
chr4 (47-182)||(48684479-48684613)
chr4 (66-188)||(37370278-37370399)
chr4 (115-182)||(53401730-53401797)
chr4 (116-182)||(51783584-51783650)
chr4 (92-190)||(39911672-39911770)
chr4 (115-169)||(49090218-49090272)
chr4 (103-188)||(23752744-23752829)
chr4 (104-169)||(44818847-44818912)
chr4 (19-182)||(12865218-12865380)
chr4 (115-182)||(52632961-52633028)
chr4 (23-173)||(48379837-48379980)
chr4 (115-182)||(48316114-48316181)
chr4 (43-113)||(38721999-38722069)
chr4 (116-182)||(50501040-50501106)
[»] chr2 (7 HSPs)
chr2 (115-182)||(4293587-4293654)
chr2 (101-182)||(6150074-6150155)
chr2 (115-158)||(40772148-40772191)
chr2 (115-169)||(26050435-26050489)
chr2 (119-181)||(27892699-27892761)
chr2 (117-188)||(35048266-35048337)
chr2 (101-191)||(7136836-7136926)
[»] scaffold0166 (1 HSPs)
scaffold0166 (101-182)||(23981-24062)
[»] scaffold0069 (1 HSPs)
scaffold0069 (118-191)||(4093-4166)


Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Original strand, 8901975 - 8902526
Alignment:
Q  16 caattatgtcattcaataaatatata--cctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttc 113  Q
    ||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  8901975 caattatgtcattcaataaatatatatacatttctttcctgtcacaatccattcactttcacttctatcaaacaatcgaaaaaatcaactcattttcttc 8902074  T
Q  114 ccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaatcaacacattttcttaattcta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8902075 ccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaatcaacacattttcttaattcta 8902174  T
Q  214 caagtgggtaaattatgacttagtcacggtcatgtataaatattatatgtgattatgattacattaagaagtgaatttaacgcaaagatgaagaaaatta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8902175 caagtgggtaaattatgacttagtcacggtcatgtataaatattatatgtgattatgattacattaagaagtgaatttaacgcaaagatgaagaaaatta 8902274  T
Q  314 gtcatggtcatatacattatatttggatgatgtcatatatcacggtaagaaaattataattataattattttgtttggcatgatggacctaaagtttgaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8902275 gtcatggtcatatacattatatttggatgatgtcatatatcacggtaagaaaattataattataattattttgtttggcatgatggacctaaagtttgaa 8902374  T
Q  414 acacatgaattggaactcattatttttccatttgtttttaacctttttatggtcataaaagattacagacctgcaccttagtgcaaagtagaaagaaaca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8902375 acacatgaattggaactcattatttttccatttgtttttaacctttttatggtcataaaagattacagacctgcaccttagtgcaaagtagaaagaaaca 8902474  T
Q  514 aatgtcgagaaataaagatagaaaatgttcttcaataaatggccctactatg 565  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8902475 aatgtagagaaataaagatagaaaatgttcttcaataaatggccctactatg 8902526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 2736052 - 2735890
Alignment:
Q  19 ttatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccact 118  Q
    ||||||| || | |||||||| | |||||||| ||| || |||| | ||||||||||| ||| ||||||||| ||||||||| || | ||||  | ||||    
T  2736052 ttatgtcttttactaaatatacatctttcttttctcacataatctagtcactttcactcataccaaacaacc-aaaaaatcatctaactttccactcact 2735954  T
Q  119 ttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||| ||||||  ||||||||||||||||| || ||||||||||||||||| ||||||    
T  2735953 ttcattccttcaacaatatttcctcttactatcttttctactactttcttttctctttcaaaca 2735890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 43022914 - 43022825
Alignment:
Q  102 ctcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    |||| ||||| |||| |||||||||||| ||| || ||||| ||||| |||||||||  ||||||||||||  |||||||||||| ||||    
T  43022914 ctcactttctacccattttcattccttttacattctttcctattactttctttcctttcactttcttttctgatccaaacacacctttaa 43022825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 43988183 - 43988116
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||||| ||||| |||||||||||||| ||||| |||||||||| |||||| ||| || ||||||||    
T  43988183 cactttctttcctctaacaatcattccttttactttctttccttcaactttcctttatcatccaaaca 43988116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 44623847 - 44623780
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||||||||| || || |||||||| ||| ||||||||| |||||||| |||| ||||||||    
T  44623847 cactttcattcctttaccattctttcctcttgctaactttccttccactttcttctctcatccaaaca 44623780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 33698597 - 33698651
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttt 169  Q
    |||||||||||||| || |||| |||||||||||||||||||||  |||||||||    
T  33698597 cactttcattccttcaataatctttcctcttactatctttcctttcactttcttt 33698651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 45025892 - 45025946
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttt 169  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||| |||||||||    
T  45025892 cactttcattccttcaacaatcattcctattacttactttccttcgactttcttt 45025946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 31011674 - 31011549
Alignment:
Q  43 ctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttcattcctttaacaatcattcct 142  Q
    ||||||||||||| |||||| ||||||||||  ||||| ||||| ||| ||| ||||| |||| |||||||   ||||| ||||||| || |||  ||||    
T  31011674 ctttctttcctctaacaatctattcactttcttttataccaaaccaccaaaacaatcatctcactttcttctacctttctttccttttactatctatcct 31011575  T
Q  143 cttactatctttccttctactttctt 168  Q
     | ||| |||||||||  ||||||||    
T  31011574 ttcactttctttcctttaactttctt 31011549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 7345205 - 7345271
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaac 181  Q
    |||||||||||||||| || || ||| ||||| ||||||| |||| |||||||| |||| |||||||    
T  7345205 cactttcattcctttaccattctttcttcttattatcttttcttccactttcttctctcatccaaac 7345271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 38442273 - 38442187
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccc 187  Q
    |||||||||||  |||||||||||||||| | | |  ||||| ||||| |||||||||  ||||||| ||||  |||||||||||||    
T  38442273 actcattttctatccactttcattccttttatattttttcctattactttctttcctttcactttctcttctgatccaaacacaccc 38442187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 21271517 - 21271590
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||||||||||||| ||| ||| |||| ||||| ||||||||||  |||||||||  | ||||||||| |||||    
T  21271517 cactttcattccttcaactatctttccacttacaatctttcctttcactttctttgatattccaaacaaaccct 21271590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 35594332 - 35594405
Alignment:
Q  116 actttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctt 189  Q
    |||||| |||||| ||||||| ||||| ||||||||||||||   |||||||||||    ||||||||||||||    
T  35594332 actttctttccttcaacaatctttccttttactatctttcctcacactttcttttccaagccaaacacaccctt 35594405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 37932145 - 37932201
Alignment:
Q  33 aaatatatacctttctttcctctcacaatccattcac-tttcacttatatcaaacaa 88  Q
    ||||||||  ||||||||||||||||| ||||||||| |||||||| || |||||||    
T  37932145 aaatatatcactttctttcctctcacattccattcacttttcacttctaccaaacaa 37932201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 35100660 - 35100476
Alignment:
Q  17 aattatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaa----------tcaactcat 106  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||  || ||||||||| ||||||          || ||||      
T  35100660 aattatgtcattgaataaatatacacctttctttcctatcacaatccatttactttcactactaccaaacaaccaaaaaaacaactcactttccactctc 35100561  T
Q  107 tttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  35100560 tttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacatatccttaa 35100476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 12005642 - 12005492
Alignment:
Q  43 ctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatc----aact-------cattttcttcccactttcattcctttaa 131  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||  ||||||||    ||||       || ||||| | |||||||||||||||||    
T  12005642 ctttctttcctctcactatccatgcactttcacttataccaaacaactaaaaaaatcgtctaactttccattcactttctactcactttcattcctttaa 12005543  T
Q  132 caatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||| ||||||||||||||||||||| | ||||||||  |||||||||||    
T  12005542 caatctttcctcttactatctttccttattctttctttagtcttccaaaca 12005492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 28613439 - 28613515
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    |||||||||||||||||||||  ||  |||||||||||||||||  |||||||||  ||||||||||| ||||||||    
T  28613439 cactttcattcctttaacaatatttattcttactatctttcctttcactttctttgatcttccaaacatacccttaa 28613515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 6313133 - 6313206
Alignment:
Q  117 ctttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctta 190  Q
    |||||||||||| ||||||| |||| | ||||||||||||||  |||||||||  ||||||||||| |||||||    
T  6313133 ctttcattccttcaacaatctttccacatactatctttcctttcactttctttcatcttccaaacaaaccctta 6313206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 24388352 - 24388455
Alignment:
Q  66 tcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctacttt 165  Q
    ||||||||||||||| ||||||| | ||| ||||| ||||  |||| | |||||||||| ||| ||||||| ||||| ||||| |||||||||  |||||    
T  24388352 tcactttcacttataacaaacaa-ctaaataatcatctcacattctactcactttcatttcttcaacaatctttccttttactttctttcctttcacttt 24388450  T
Q  166 ctttt 170  Q
    |||||    
T  24388451 ctttt 24388455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 23153697 - 23153627
Alignment:
Q  43 ctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttc 113  Q
    ||||||||||||| |||||| ||||||||||  ||||| ||||||||| ||| ||||| |||| |||||||    
T  23153697 ctttctttcctctaacaatctattcactttcttttataccaaacaaccaaaacaatcatctcactttcttc 23153627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 24273861 - 24273757
Alignment:
Q  66 tcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttct-actt 164  Q
    ||||||||||||||| ||||||| | ||| ||||| ||||  |||| | |||||||||| ||| ||||||| ||||| ||||| ||||||||| | ||||    
T  24273861 tcactttcacttataacaaacaa-ctaaataatcatctcacattctactcactttcatttcttcaacaatctttccttttactttctttccttttcactt 24273763  T
Q  165 tctttt 170  Q
    ||||||    
T  24273762 tctttt 24273757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 24781679 - 24781598
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||| ||||| | |||||||||||||| | |||||||||||| ||| |||| ||||||  ||||||| |||| ||||||||    
T  24781679 actcaatttctactcactttcattccttcatcaatcattcctcatacaatctatccttcctctttcttctctcatccaaaca 24781598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 34912048 - 34911976
Alignment:
Q  116 actttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||||||| |||  ||||||||||||| |||||||||||||||  ||||||||||    ||||||||||||||    
T  34912048 actttcatccctacaacaatcattccttttactatctttccttacactttctttttcaatccaaacacaccct 34911976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 6231189 - 6231272
Alignment:
Q  17 aattatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatca 100  Q
    ||||||||| || | |||||||| | |||||||||||| || |||| |  |||||||||| ||| ||||||||| |||||||||    
T  6231189 aattatgtcttttactaaatatacatctttctttcctcacataatctagccactttcactcataccaaacaaccaaaaaaatca 6231272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 8166266 - 8166212
Alignment:
Q  116 actttcattcctttaacaatcattcctcttactatctttccttctactttctttt 170  Q
    |||||| |||||||||||||| ||||||||||| ||||||||   ||||||||||    
T  8166266 actttctttcctttaacaatctttcctcttactttctttcctctcactttctttt 8166212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 35112566 - 35112624
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttc 159  Q
    ||||| |||||||  |||||| |||||||||||||| ||||||||||| || |||||||    
T  35112566 actcactttcttcttactttctttcctttaacaatctttcctcttactttcattccttc 35112624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 48647764 - 48647945
Alignment:
Q  17 aattatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaact-----------ca 105  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||| ||| ||||||||           ||    
T  48647764 aattatgtcattgaataaatatatacctttctttcctctcacaatccattcactttcattcctaccaaacaaccaaaataatcaacttacttttcattca 48647863  T
Q  106 ttttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccc 187  Q
     |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||    
T  48647864 ctttctttccactttcattcctttaacaatcattctttttactatctttccttctactttcttttctcttccaaacataccc 48647945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 12406130 - 12406014
Alignment:
Q  66 tcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctacttt 165  Q
    ||||||||||||||| ||||||||  ||| ||||| |||| ||||| | |||||||||||||||| || || |||||||||||| ||||||||| |||||    
T  12406130 tcactttcacttataccaaacaactaaaataatcatctcactttctactcactttcattcctttaccattctttcctcttactacctttccttccacttt 12406031  T
Q  166 cttttctcttccaaaca 182  Q
    ||| | || ||||||||    
T  12406030 cttctttcatccaaaca 12406014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 25591010 - 25590830
Alignment:
Q  19 ttatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttccc--- 115  Q
    |||||||||| |  ||||||||  ||||| ||||||||||| ||||||||||||||||| |||||||||| | ||||||| | | ||||||| || |       
T  25591010 ttatgtcatttacaaaatatatcactttccttcctctcacattccattcactttcacttctatcaaacaatcaaaaaaattatcacattttcctctcact 25590911  T
Q  116 --------actttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
            ||||||||||||| ||||||| ||||| ||||||||||||||   |||||||||||   ||||||||||||||    
T  25590910 ttctattaactttcattccttcaacaatctttccttttactatctttcctcacactttcttttccaatccaaacacaccct 25590830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 41055774 - 41055845
Alignment:
Q  117 ctttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||||||||||| ||||||| |||||||||||||||||||||  |||||||||  ||||||||||| |||||    
T  41055774 ctttcattccttcaacaatctttcctcttactatctttcctttcactttctttgatcttccaaacaaaccct 41055845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 6955981 - 6956054
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||||||||||||| ||||||| |||||||||||||||||||||  |||||||||  || |||||||| |||||    
T  6955981 cactttcattccttcaacaatctttcctcttactatctttcctttcactttctttgatcatccaaacataccct 6956054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 41727445 - 41727366
Alignment:
Q  113 cccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaat 192  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||  |||||||||  || |||||| | |||||||||    
T  41727445 cccactttcattccttcaacaacctttcctcttactatctttcctttcactttctttgatcatccaaatatacccttaat 41727366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 50406648 - 50406817
Alignment:
Q  20 tatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactt 119  Q
    |||||||||  | ||||||||  |||||||| ||||||   || |||| |||||||||| | ||||||||| | |||||||  ||| ||||  | |||||    
T  50406648 tatgtcattttacaaatatatctctttcttttctctcattttctattctctttcacttaaaccaaacaacc-acaaaatcatatcactttccactcactt 50406746  T
Q  120 tcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctta 190  Q
    ||||||||| |||| || |||||  |||| |||||||||  ||||||| ||||| |||||||| |||||||    
T  50406747 tcattccttcaacattctttccttatactttctttcctttcactttctcttctcatccaaacagaccctta 50406817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 41054382 - 41054228
Alignment:
Q  16 caattatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttccc 115  Q
    |||| |||||||||| ||||||||   ||||||||||| ||||  || | ||||||||| | ||| |||||| |  ||| ||||| |||| |||||||      
T  41054382 caataatgtcattcactaaatataactctttctttcctttcactttctactcactttcattcataccaaaca-cttaaacaatcatctcactttcttctt 41054284  T
Q  116 actttcattcctttaacaatcat-tcctcttactatctttccttctactttctttt 170  Q
    |||||| |||||||||||||| |  |||||||| ||||||||||  ||||||||||    
T  41054283 actttctttcctttaacaatcttaacctcttacaatctttcctttcactttctttt 41054228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 2032430 - 2032494
Alignment:
Q  118 tttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||||||||| ||||||| ||||| |||||||||||||||  |||||||||  || ||||||||    
T  2032430 tttcattccttcaacaatctttccttttactatctttcctttcactttctttgatcatccaaaca 2032494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 43021044 - 43021118
Alignment:
Q  114 ccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    ||||||||||| |||| ||| || || || ||||| |||||||||  ||||||||||||  ||||||||||||||    
T  43021044 ccactttcatttcttttacattcttttctattactttctttcctttcactttcttttctgatccaaacacaccct 43021118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 330879 - 330948
Alignment:
Q  113 cccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||||||| |||||||||||||| ||| | |||| |||||||||  |||||||| || || ||||||||    
T  330879 cccactttctttcctttaacaatctttcattttacaatctttcctcttactttctcttgtcatccaaaca 330948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 14590261 - 14590177
Alignment:
Q  26 attcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttc 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||||| ||||    
T  14590261 attcaataaatatatacttttctttcctctcacaatccattcactttcactcttaccaaacaaccaaaaaaatcaactcactttc 14590177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 14590331 - 14590271
Alignment:
Q  16 caattatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcact 76  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  14590331 caattatgtcattcaataaatatatatctttctttcctctcacaatccattctctttcact 14590271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 23954303 - 23954223
Alignment:
Q  33 aaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttc 113  Q
    |||||||||  ||||||||||||||||||| ||||||||||  ||||| ||||||||  ||| ||||| |||| |||||||    
T  23954303 aaatatatatttttctttcctctcacaatctattcactttcttttataccaaacaactaaaataatcatctcactttcttc 23954223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 12101178 - 12101248
Alignment:
Q  43 ctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttc 113  Q
    |||||||||||||||||| | ||||||||||  ||||| ||||||||  ||| ||||| |||| |||||||    
T  12101178 ctttctttcctctcacaacctattcactttcttttataccaaacaactcaaataatcatctcactttcttc 12101248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 14590163 - 14590123
Alignment:
Q  114 ccactttcattcctttaacaatcattcctcttactatcttt 154  Q
    ||||| ||||||| ||||||||||||||||||||| |||||    
T  14590163 ccactatcattccattaacaatcattcctcttactttcttt 14590123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 24163501 - 24163421
Alignment:
Q  108 ttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||| |||||||||| ||||||| || || ||||| | ||||||||||||| |||||||| || |  |||||||| |||||    
T  24163501 ttctacccactttcaatcctttatcattctttcctttcactatctttccttttactttctattgttgtccaaacataccct 24163421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 13781555 - 13781394
Alignment:
Q  19 ttatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccact 118  Q
    ||||||| || | |||||||||| ||||||||||||||| |||| | ||||||||| | ||| ||||||||| |||||||||  | | ||||  |  |||    
T  13781555 ttatgtcttttattaaatatatatctttctttcctctcataatctagtcactttcattcatagcaaacaaccaaaaaaatcatttaactttccacttact 13781456  T
Q  119 ttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||| ||||||| ||||||||| ||| ||  |||||||||||||||||||||||||||    
T  13781455 ttcattccttcaacaatctttcctcttaatatttt--cttctactttcttttctcttccaaaca 13781394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 38459142 - 38459215
Alignment:
Q  117 ctttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctta 190  Q
    |||||||||||| ||||||| |||||||||||||||||||||  |||||||||  ||||||||||| |||||||    
T  38459142 ctttcattccttcaacaatctttcctcttactatctttcctttcactttctttgatcttccaaacaaaccctta 38459215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 5806649 - 5806725
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    ||||||| |||||||||||||| |||||||||||||||||||||  |||||||||  ||||||||| | ||||||||    
T  5806649 cactttctttcctttaacaatctttcctcttactatctttcctttcactttctttgatcttccaaatatacccttaa 5806725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 25036074 - 25036145
Alignment:
Q  117 ctttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||||||||||| ||||||| |||||||||||||||||||||  |||||||||  ||||||||||| |||||    
T  25036074 ctttcattccttcaacaatctttcctcttactatctttcctttcactttctttcatcttccaaacaaaccct 25036145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 25041286 - 25041357
Alignment:
Q  117 ctttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||||||||||| ||||||| |||||||||||||||||||||  |||||||||  ||||||||||| |||||    
T  25041286 ctttcattccttcaacaatctttcctcttactatctttcctttcactttctttcatcttccaaacaaaccct 25041357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 25040292 - 25040220
Alignment:
Q  116 actttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||||| |||||| ||||||| || ||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  25040292 actttctttccttaaacaatcttttctcttactatctttcctttcactttcttttctcatccaaacaaaccct 25040220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 37071034 - 37070962
Alignment:
Q  119 ttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    |||||||||| | ||||| |||||| |||| ||||||||| |||||||||||||| |||||||  ||||||||    
T  37071034 ttcattccttcatcaatctttcctcatactttctttccttatactttcttttctcgtccaaacggacccttaa 37070962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 386715 - 386802
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    ||||| ||||||  ||||||| ||||| |||||||||||||| | ||| |||||||||  |||||| |||  ||||||||||||||||    
T  386715 actcactttcttttcactttctttcctataacaatcattcctttcactttctttccttaaactttcatttaccttccaaacacaccct 386802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 4861488 - 4861646
Alignment:
Q  33 aaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttcattcctttaac 132  Q
    |||||||||||||| |||||| | ||  ||  |||||||||| ||||| ||||||||  ||| ||||| |||| |||||   |||||||  ||| | |||    
T  4861488 aaatatatacctttttttccttttactttcttttcactttcatttataacaaacaact-aaacaatcatctcactttctattcactttctatccatcaac 4861586  T
Q  133 aatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaat 192  Q
    |||| ||||| | |||||||||||||  |||||||| |||| |||||||| | |||||||    
T  4861587 aatctttcctttcactatctttcctttcactttcttctctcatccaaacaaagccttaat 4861646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 10462534 - 10462599
Alignment:
Q  123 ttcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    ||||||||| |||| |||||||||||||| ||||||  |||||||||  ||||||||||| |||||    
T  10462534 ttcctttaataatctttcctcttactatccttcctttcactttctttgatcttccaaacataccct 10462599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 46121703 - 46121634
Alignment:
Q  44 tttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttc 113  Q
    ||||||||||||||||||| ||||||||||  ||||| ||||||||  ||| ||||| |||| |||||||    
T  46121703 tttctttcctctcacaatctattcactttcttttataccaaacaactaaaataatcatctcactttcttc 46121634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 6222493 - 6222537
Alignment:
Q  114 ccactttcattcctttaacaatcattcctcttactatctttcctt 158  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||    
T  6222493 ccactttcatttctttaacaatctttcctcttactttctttcctt 6222537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 37552861 - 37552933
Alignment:
Q  118 tttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctta 190  Q
    ||||||||||||||||||| |||||| |||  ||||||||| | ||||||||  || |||||||| |||||||    
T  37552861 tttcattcctttaacaatctttcctcgtaccttctttccttatcctttctttggtcatccaaacaaaccctta 37552933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 3936519 - 3936452
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||||||| ||||||| || ||||||||||||||| ||  |||||||||  || ||||||||    
T  3936519 cactttcattccttcaacaatcttttctcttactatctttcttttcactttctttggtcatccaaaca 3936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 35842818 - 35842744
Alignment:
Q  116 actttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctta 190  Q
    ||||||||||||| ||||||| ||  | ||| |||||||||||  |||||||||||   ||||||||||||||||    
T  35842818 actttcattccttcaacaatctttttttttattatctttccttacactttcttttccaatccaaacacaccctta 35842744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 35842926 - 35842836
Alignment:
Q  19 ttatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcatttt 109  Q
    |||||||||| |  ||||||||  ||||| ||| ||||||| |||||||||||| |||| || ||||||| | ||||||||| | ||||||    
T  35842926 ttatgtcatttacaaaatatatcactttccttcttctcacattccattcacttttacttttaccaaacaatcaaaaaaatcatcacatttt 35842836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 9414891 - 9414822
Alignment:
Q  121 cattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctta 190  Q
    |||||||| ||| ||| |||| ||||| ||||||||||  |||||||||  ||||||||||| |||||||    
T  9414891 cattccttcaactatctttccgcttacaatctttcctttcactttctttgatcttccaaacaaaccctta 9414822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 23980873 - 23980954
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||| ||  | |||| |||| ||||||||| ||||| | ||| |||||||||  ||||||||||||| ||||||||    
T  23980873 actcattttcatcttattttctttcccttaacaatctttcctttcactttctttcctttaactttcttttctcatccaaaca 23980954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 33775345 - 33775426
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcatt-cctcttactatctttccttctactttcttttctcttccaaac 181  Q
    ||||| ||||| | |||||||||||||||| || || || ||||||||||| |||||||  |||||||| |||| |||||||    
T  33775345 actcactttctactcactttcattcctttaccattcttttcctcttactatttttcctttcactttcttctctcatccaaac 33775426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 38673410 - 38673502
Alignment:
Q  61 tccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttcattcctttaacaatcattcctcttactatcttt 154  Q
    |||||||||||||||| ||| ||||||  | ||| |||||  ||| |||||||  |||||| |||||||||||||| ||||||| ||| |||||    
T  38673410 tccattcactttcactcataccaaacacac-aaataatcatttcactttcttcttactttctttcctttaacaatctttcctctcactttcttt 38673502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 11943162 - 11943003
Alignment:
Q  43 ctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaact-----------cattttcttcccactttcattcctttaa 131  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||  ||||||||| ||           || ||||| | ||||||||||| |||||    
T  11943162 ctttctttcctctcactatccatgcactttcacttataccaaacaactaaaaaaatcatctaactttccattcaatttctactcactttcattcttttaa 11943063  T
Q  132 caatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    ||||| ||||||||||||||||||||| ||||||||||  ||||||||||| | ||||||    
T  11943062 caatctttcctcttactatctttccttatactttctttagtcttccaaacaaagccttaa 11943003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 13637776 - 13637860
Alignment:
Q  107 tttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||  |||||||||  || |||||||| ||||||||    
T  13637776 tttctacccactttcattccttcaacaatctttcctcttactatctttcctttcactttctttgatcatccaaacatacccttaa 13637860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 13738189 - 13738273
Alignment:
Q  107 tttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||  |||||||||  || |||||||| ||||||||    
T  13738189 tttctacccactttcattccttcaacaatctttcctcttactatctttcctttcactttctttgatcatccaaacatacccttaa 13738273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 42639710 - 42639636
Alignment:
Q  117 ctttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    |||||||||||| ||||||| |||||||||||||||||| ||  |||||||||  ||||||||||| ||||||||    
T  42639710 ctttcattccttcaacaatctttcctcttactatctttcatttcactttctttgatcttccaaacaaacccttaa 42639636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 39029035 - 39029098
Alignment:
Q  119 ttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||| | ||||| ||||||||||| ||||||||| |||||||||||||| ||||||||    
T  39029035 ttcattccttaaccaatctttcctcttactttctttccttatactttcttttctcatccaaaca 39029098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 17785194 - 17785127
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||||||||||||||| |||||| |||| ||||||||| | ||||||||  || ||||||||    
T  17785194 cactttcattcctttaacaatctttcctcatactttctttccttatcctttctttggtcatccaaaca 17785127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 39566845 - 39566770
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctta 190  Q
    |||||||||||||| |||| || |||||| |||| |||||||||  ||||||| ||||| |||||||| |||||||    
T  39566845 cactttcattccttcaacattctttcctcatactttctttcctttcactttctcttctcatccaaacagaccctta 39566770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 2086521 - 2086451
Alignment:
Q  116 actttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacc 186  Q
    |||||||||| || ||||||| ||||| ||||||||||||||   ||||||||||||  ||||||||||||    
T  2086521 actttcattctttcaacaatctttccttttactatctttcctcacactttcttttcttatccaaacacacc 2086451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 40463979 - 40463909
Alignment:
Q  43 ctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttc 113  Q
    ||||||||||||| |||||| ||||||||||  ||||| ||||||||| ||| ||||| |||| |||||||    
T  40463979 ctttctttcctctaacaatctattcactttcttttataccaaacaaccaaaacaatcatctcactttcttc 40463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 2086631 - 2086550
Alignment:
Q  19 ttatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatca 100  Q
    |||||||||| |  ||||||||   |||||||||||| ||| ||||||||||||||||| || ||||||| | |||||||||    
T  2086631 ttatgtcatttatgaaatatatcattttctttcctcttacattccattcactttcacttctaccaaacaatcaaaaaaatca 2086550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 24964247 - 24964334
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    ||||| ||||| ||||||||||||| || ||||||| || || |||| ||||||||||  |||||||||  || |||||||| |||||    
T  24964247 actcactttctacccactttcattctttcaacaatcttttcttttaccatctttcctttcactttctttgatcatccaaacagaccct 24964334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 30203238 - 30203362
Alignment:
Q  19 ttatgtcattcaataaatatatacctttctttcctctcacaatccattc-actttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccac 117  Q
    |||||||| | |||||| ||||| ||||||||||||| ||  || |||| |||||| ||| || |||||||||  || ||||| |||| ||||| | | |    
T  30203238 ttatgtcaattaataaagatatatctttctttcctcttactttctattctactttctcttttaccaaacaaccataacaatcatctcactttctactctc 30203337  T
Q  118 tttcattcctttaacaatcattcct 142  Q
    |||||||||||  |||||| |||||    
T  30203338 tttcattccttacacaatctttcct 30203362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 48684479 - 48684613
Alignment:
Q  47 ctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttcattcctttaacaatcattcctctta 146  Q
    ||||||||||||  |||||||||||||||| ||| ||||||||  ||||||||| || | ||||    |||||||||||||| ||||||| ||||||| |    
T  48684479 ctttcctctcactttccattcactttcactcataccaaacaact-aaaaaatcatcttactttccatacactttcattccttcaacaatctttcctctca 48684577  T
Q  147 ctatctttccttctactttcttttctcttccaaaca 182  Q
    || |||||||||| |||||||| |||| ||||||||    
T  48684578 ctttctttccttccactttcttctctcatccaaaca 48684613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 37370278 - 37370399
Alignment:
Q  66 tcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctacttt 165  Q
    ||||||||| ||||||||||||||  ||||||||| |||| ||||  | |||||||||||||| ||||||| || ||||||| ||||||||||  | |||    
T  37370278 tcactttcatttatatcaaacaact-aaaaaatcatctcactttccactcactttcattccttcaacaatcttttctcttacaatctttcctttcatttt 37370376  T
Q  166 cttttctcttccaaacacaccct 188  Q
    ||||| || |||||||| |||||    
T  37370377 cttttatcatccaaacataccct 37370399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 53401730 - 53401797
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||||||||| || || |||||||||||||||||||||| |||||||| |||| ||||||||    
T  53401730 cactttcattcctttaccattctttcctcttactatctttccttccactttcttctctcatccaaaca 53401797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 51783650 - 51783584
Alignment:
Q  116 actttcattcctttaacaatcattcctcttactatcttt-ccttctactttcttttctcttccaaaca 182  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  51783650 actttctttcctttaacaatctttcctcttactatcttttccttc-actttcttttctcatccaaaca 51783584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 39911770 - 39911672
Alignment:
Q  92 aaaaaatcaactcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccctta 190  Q
    ||||||||| |||| |||||||  |||||| ||||||| || ||| ||||||||||||||||||||   |||||||||| |  |||||||| |||||||    
T  39911770 aaaaaatcatctcactttcttcttactttctttcctttgactatctttcctcttactatctttcctctcactttcttttgtgatccaaacaaaccctta 39911672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 49090218 - 49090272
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttt 169  Q
    ||||||||||| || ||||||||||||||||||| |||||||||| |||||||||    
T  49090218 cactttcattctttcaacaatcattcctcttactttctttccttcgactttcttt 49090272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 23752744 - 23752829
Alignment:
Q  103 tcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    ||||||||| | | |||||||||||| ||||||| ||||| ||| |||||||||||  |||||||||  ||||||||||| |||||    
T  23752744 tcattttctactctctttcattccttcaacaatctttccttttattatctttcctttcactttctttgatcttccaaacaaaccct 23752829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 44818847 - 44818912
Alignment:
Q  104 cattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttt 169  Q
    |||||||| | |||||||||||||| ||||||| ||||||||||||||||||| |  |||||||||    
T  44818847 cattttctactcactttcattccttcaacaatctttcctcttactatctttcccttcactttcttt 44818912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 12865218 - 12865380
Alignment:
Q  19 ttatgtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccact 118  Q
    |||||||||| ||||||   ||| |||||||||||||||   ||  |||||||||||| ||| ||||||||  ||||||||| |  | ||||  | ||||    
T  12865218 ttatgtcatttaataaaaccataactttctttcctctcattttcttttcactttcactaataccaaacaact-aaaaaatcatcaaactttccactcact 12865316  T
Q  119 ttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    |||||||||| | ||||| |||||| ||| |||| ||||||  ||||||| |||| ||||||||    
T  12865317 ttcattccttcatcaatctttcctcatacaatctatccttcctctttcttctctcatccaaaca 12865380  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 52632961 - 52633028
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||||| ||||| |||||||||||||| ||||| |||||||||| |||||| ||| || ||||||||    
T  52632961 cactttctttcctctaacaatcattccttttactttctttccttcaactttcctttatcatccaaaca 52633028  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 48379837 - 48379980
Alignment:
Q  23 gtcattcaataaatatatacctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttcccactttca 122  Q
    |||||| | |||||||| | ||||||||||||  |||||  |||||||||||||  || ||||||||| ||||||| | |||| ||||| | ||||||||    
T  48379837 gtcatttactaaatatacatctttctttcctc--acaatttattcactttcactcctaccaaacaacc-aaaaaattatctcactttctactcactttca 48379933  T
Q  123 ttcctttaacaatcattcctcttactatctttccttctactttcttttctc 173  Q
    |||||| |||| || |||| |||    |||||| |||||| ||||||||||    
T  48379934 ttccttcaacattctttccgctt----tctttctttctaccttcttttctc 48379980  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 48316181 - 48316114
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||||| ||||| |||||||||||||| ||||  |||||||||| |||||| ||| || ||||||||    
T  48316181 cactttctttcctctaacaatcattccttttaccttctttccttcaactttcctttgtcatccaaaca 48316114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 38722069 - 38721999
Alignment:
Q  43 ctttctttcctctcacaatccattcactttcacttatatcaaacaaccgaaaaaatcaactcattttcttc 113  Q
    |||||||||||||||||||| ||||||||||  ||||| |||||| |  ||| ||||| |||| |||||||    
T  38722069 ctttctttcctctcacaatctattcactttcttttataccaaacagctcaaataatcatctcactttcttc 38721999  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 50501040 - 50501106
Alignment:
Q  116 actttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||||| |||| ||||||||||||||  |||| ||||||||| |||||| | ||||| ||||||||    
T  50501040 actttcaatcctctaacaatcattccttctactttctttccttttactttttcttctcatccaaaca 50501106  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 4293587 - 4293654
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||| || |||||||  |||||||||||    
T  4293587 cactttcattcctttgacaatctttcctcttactatttttccttttattttctttgatcttccaaaca 4293654  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 6150155 - 6150074
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||| ||||| | |||||||||||||| ||||||| ||||| |||||||||||||||  |||||||||  || ||||||||    
T  6150155 actcactttctactcactttcattccttcaacaatctttccttttactatctttcctttcactttctttgatcatccaaaca 6150074  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 40772148 - 40772191
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttcctt 158  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  40772148 cactttcattcctttaacaatctttcctcttactttctttcctt 40772191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 26050489 - 26050435
Alignment:
Q  115 cactttcattcctttaacaatcattcctcttactatctttccttctactttcttt 169  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||  |||||||||    
T  26050489 cactttcattccttcaacaatctttcctcttgctatctttcctttcactttcttt 26050435  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 27892699 - 27892761
Alignment:
Q  119 ttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaac 181  Q
    |||||||||| | ||||| |||||| |||| ||||||||| |||||||||||||| |||||||    
T  27892699 ttcattccttcatcaatctttcctcatactctctttccttatactttcttttctcgtccaaac 27892761  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 35048266 - 35048337
Alignment:
Q  117 ctttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacaccct 188  Q
    |||||||||||| ||||||| |||| | ||||||||||||||  |||||||||  |||| |||||| |||||    
T  35048266 ctttcattccttcaacaatctttccacatactatctttcctttaactttctttcatctttcaaacaaaccct 35048337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 7136926 - 7136836
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    ||||| |||||  |||||||||||||||| ||| || ||||| | ||| | |||||||  ||||||| ||||  |||||||||||||||||    
T  7136926 actcactttctatccactttcattccttttacattctttcctttaactttatttcctttcactttctcttctgatccaaacacacccttaa 7136836  T

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Target: scaffold0166 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 24062 - 23981
Alignment:
Q  101 actcattttcttcccactttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaaca 182  Q
    ||||| ||||| | |||||||||||||| | |||||||||||| ||| |||| ||||||  ||||||| |||| ||||||||    
T  24062 actcaatttctactcactttcattccttcatcaatcattcctcatacaatctatccttcctctttcttctctcatccaaaca 23981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 4166 - 4093
Alignment:
Q  118 tttcattcctttaacaatcattcctcttactatctttccttctactttcttttctcttccaaacacacccttaa 191  Q
    ||||| ||||||| || || ||||| | |||||||||||||||||||||| || || |||||||| ||||||||    
T  4166 tttcaatcctttatcattctttcctttcactatctttccttctactttctattgtcatccaaacatacccttaa 4093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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