View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_30 (Length: 278)
Name: NF4094_low_30
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 24449969 - 24449724
Alignment:
| Q |
11 |
cacagaaccctggtcaagctagaagaatcatgtgtcatctcatttaaacgttgttgagtt---atttagaagtttgagatatcccctatctagcttctca |
107 |
Q |
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| T |
24449969 |
cacagaaccctgatcaaactagaagaatcatgtgtcatctcatttaaacgttgtcgagttgttatttagaagtttgagatatcccctatctagcttctca |
24449870 |
T |
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| Q |
108 |
caccatccattataaaatatccacttttaagtacttaagcgaatctcacatttataaattactcatttataattttttaataatcgtacatactaaacat |
207 |
Q |
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| T |
24449869 |
catcatccattataaaatatccacttttaagtacttaagcgaatctcacatttacaaattattcatttataactttttaataatcgtatatactaaacat |
24449770 |
T |
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| Q |
208 |
tcaaactaacaccaatgaaaaaagttttaaatgatttccaccaata |
253 |
Q |
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| T |
24449769 |
tcaatctaacaccaatgaaaaaagttttaaatgatttcgaccaata |
24449724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 24449695 - 24449656
Alignment:
| Q |
214 |
taacaccaatgaaaaaagttttaaatgatttccaccaata |
253 |
Q |
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| T |
24449695 |
taacaccaatgaaaaaagttttaaataatttccaccaata |
24449656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 55272909 - 55272865
Alignment:
| Q |
167 |
tactcatttataattttttaataatcgtacatactaaacattcaa |
211 |
Q |
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| T |
55272909 |
tactcatttataattttttaataatagtacataataaacactcaa |
55272865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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