View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4094_low_36 (Length: 249)
Name: NF4094_low_36
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8436773 - 8436535
Alignment:
| Q |
1 |
tggttggttctttaaaatattatttttggttttcttttgtttcttgtttcttcatcagagtagagattattaaattttaatccaagttcctggttgatga |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8436773 |
tggttggttttttaaaatattatttttggttttcttttgtttcttgtttcttcatcagagtagagattattaaattttaatccaagtttctggttgatga |
8436674 |
T |
|
| Q |
101 |
ttaagctattgttaccaacaaaaggacctccttggttagaaaaagttgaactatgtctgaccataccgacacatacgaagagaatgatcatgactattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8436673 |
ttaagctattgttaccaacaaaaggacctccttggttagaaaaagttgaactatgtctgaccataccgacacatccgaagagaatgatcatgactattat |
8436574 |
T |
|
| Q |
201 |
gtcacaaaccacaggccaaaaatgtttccactgcctttg |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8436573 |
gtcacataccacaggccaaaaatgtttccactgcctttg |
8436535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 8350600 - 8350551
Alignment:
| Q |
135 |
gttagaaaaagttgaactatgtctgaccataccgacacatacgaagagaa |
184 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
8350600 |
gttagaaaaagttgaactacgtctgaccataccgacacatttgaagagaa |
8350551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 8480260 - 8480325
Alignment:
| Q |
69 |
attaaattttaatccaagttcctggttgatg-attaagctattgttaccaacaaaaggacctcctt |
133 |
Q |
| |
|
|||||||||| ||| || ||| ||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
8480260 |
attaaattttcatcgaatttcttggttgatgcattaagctgctgttaccaacaaaaggacctcctt |
8480325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University