View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_4 (Length: 563)
Name: NF4094_low_4
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 247 - 556
Target Start/End: Complemental strand, 3397928 - 3397617
Alignment:
| Q |
247 |
aaactatgtggatggaatagtgagtatgggat--gtttctacttatctcagttttgtttcaaaagtaaaagatactattttgttcnnnnnnnnnnnngat |
344 |
Q |
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| T |
3397928 |
aaactatgtggatggaatagtgagtatgggatatgtttctacttatctcagttttgtttcaaaagtaaaagatactattttgttcttttttatttttgat |
3397829 |
T |
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| Q |
345 |
gaaagttcattttcacccatttgagtttaattagttcattttctctcataaggttgatatggggcttgatactccacttagagttagagtttaatatttt |
444 |
Q |
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| T |
3397828 |
gaaagttcattttcacccatttgagtttaattagttcattttctctcataaggttgatatggggcttgatactgcacttagagttagagtttaatatttt |
3397729 |
T |
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| Q |
445 |
gttttgggcatgaggacctcctttgcattaaaaagaagaagatagcatgccaaataatattattcttttaaggacaaaattatagtgcatttttctattt |
544 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
3397728 |
gttttgggcatgaggacctcctttgcataaaaaagaagaagatagcatgccaaataatattattgttttaaggacaaaactatagggcatttttctattt |
3397629 |
T |
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| Q |
545 |
gtttttcctatg |
556 |
Q |
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||||||| |||| |
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| T |
3397628 |
gtttttcgtatg |
3397617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 3398528 - 3398293
Alignment:
| Q |
14 |
aacaccaattaagtgtttgacacgttaaattaaacttacgctttcctttcaaaggtgatccttccatcacatccccaattcgcaaaataaatcaaaggaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3398528 |
aacaccaattaagtgtttgacacgttaaattaaacatacgctttcctttcaaagattatccttccatcacatccccaattcgcaaaataaatcaaaggaa |
3398429 |
T |
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| Q |
114 |
gtgacaactaattaaaagaagtagcaattgagannnnnnngaatgacaaatgtatgttaatta--atgtttgtcttttctttgttagaacttgaacatct |
211 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
3398428 |
gtgacaactaattaaaagaagtagcaattgagatttttttgaatgacaaatatatgttaattattatgtttatcttttctttgttagaacttgaacatct |
3398329 |
T |
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| Q |
212 |
ttgactcatcatcatcttctttaatcctttagctcaaac |
250 |
Q |
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||||| ||||| |||||||||||| ||| ||||||| |
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| T |
3398328 |
ttgac---ccatcaacttctttaatcccttaactcaaac |
3398293 |
T |
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