View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_41 (Length: 247)
Name: NF4094_low_41
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 33117649 - 33117793
Alignment:
| Q |
1 |
gtccatcattattgagtttagtgtgtagatataaatggttggtagtccgataacgaaatcctaatagcaggtggtcctac--gaatcttcagaagactct |
98 |
Q |
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| T |
33117649 |
gtccatcattattgagtttagtgtgtagatataaatagttggtagtccgataacgaaatcctaataggaagtgatcctacgagaatcttctgaagactat |
33117748 |
T |
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| Q |
99 |
aatactattgtagga-ttttttatattgggcctaattcatttcaat |
143 |
Q |
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| T |
33117749 |
gatactattgtaggatttttttatatt-ggcctaattcatctcaat |
33117793 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 33117787 - 33117859
Alignment:
| Q |
168 |
tctcaatgtacactattatcaagagtcatattttctaccgtgcgacttgagattttctcataacacccctttgc |
241 |
Q |
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| T |
33117787 |
tctcaatgtacactattatcaagagtcatattttcta-agtgggacttcagattttctcataacacccctttgc |
33117859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 37246793 - 37246833
Alignment:
| Q |
47 |
ccgataacgaaatcctaatagcaggtggtcctacgaatctt |
87 |
Q |
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| T |
37246793 |
ccgataacgaaaacctaatagcaggtggtccaatgaatctt |
37246833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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