View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4094_low_48 (Length: 239)

Name: NF4094_low_48
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4094_low_48
NF4094_low_48
[»] chr4 (9 HSPs)
chr4 (18-184)||(29696608-29696774)
chr4 (14-179)||(14062103-14062268)
chr4 (24-148)||(32157404-32157528)
chr4 (25-151)||(40414008-40414134)
chr4 (77-170)||(48379837-48379928)
chr4 (16-161)||(23254960-23255106)
chr4 (82-137)||(33132351-33132406)
chr4 (26-69)||(36957758-36957801)
chr4 (43-77)||(51923532-51923566)
[»] chr8 (7 HSPs)
chr8 (14-171)||(39566791-39566948)
chr8 (25-172)||(17785151-17785298)
chr8 (16-161)||(11943027-11943173)
chr8 (16-113)||(13637739-13637836)
chr8 (16-113)||(13738152-13738249)
chr8 (82-183)||(30203229-30203332)
chr8 (16-171)||(39028927-39029083)
[»] chr5 (5 HSPs)
chr5 (43-182)||(4922046-4922185)
chr5 (84-171)||(8568589-8568676)
chr5 (25-161)||(12005516-12005653)
chr5 (29-161)||(6231204-6231337)
chr5 (16-80)||(24388388-24388452)
[»] chr7 (7 HSPs)
chr7 (14-175)||(25102266-25102429)
chr7 (14-182)||(36030921-36031091)
chr7 (16-151)||(33698514-33698649)
chr7 (24-151)||(2735488-2735613)
chr7 (43-151)||(30854449-30854557)
chr7 (55-149)||(47421008-47421102)
chr7 (43-150)||(28132293-28132398)
[»] chr3 (5 HSPs)
chr3 (14-182)||(50406639-50406796)
chr3 (24-148)||(46970070-46970194)
chr3 (16-113)||(6955936-6956033)
chr3 (16-91)||(41055749-41055824)
chr3 (27-128)||(49032835-49032936)
[»] chr1 (6 HSPs)
chr1 (25-148)||(37552778-37552901)
chr1 (16-161)||(37070986-37071131)
chr1 (43-113)||(47507320-47507390)
chr1 (16-136)||(23980819-23980939)
chr1 (16-91)||(38459117-38459192)
chr1 (82-173)||(1048978-1049071)
[»] scaffold0009 (1 HSPs)
scaffold0009 (25-151)||(5832-5958)
[»] chr2 (6 HSPs)
chr2 (16-161)||(27892601-27892747)
chr2 (24-148)||(39730888-39731012)
chr2 (16-91)||(35048241-35048316)
chr2 (24-150)||(40772065-40772192)
chr2 (16-114)||(6150089-6150187)
chr2 (24-125)||(6149965-6150066)
[»] chr6 (1 HSPs)
chr6 (29-171)||(5606730-5606872)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 29696608 - 29696774
Alignment:
Q  18 aaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaa 117  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  29696608 aaagtgaaaggaaagaaagtatgaggaaagaatgtttaaggaatgaaagtgagtggaatgtgagtggaaagtgatatgattttatggttgtttggttgaa 29696707  T
Q  118 gtgaaagtgaatagaaagtgagagggaagaaagaagtatatttataaaatgacatacatgcccttga 184  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  29696708 gtgaaagtgaatagaaagtgagaggaaagaaaaaagtatatttataaaatgacatacatgcccttga 29696774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 14062268 - 14062103
Alignment:
Q  14 agagaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggt 113  Q
    |||||| || |||||||||||||||| | |||||||| || ||||||||||||||| ||||||||||   ||||||||||| ||||| |||||||||| |    
T  14062268 agagaaggtgaaaggaaagaaagtatcaagaaagaatgttgaaggaatgaaagtgaatggaatgtgatcggaaagtgatatgattttgtggttgtttgtt 14062169  T
Q  114 tgaagtgaaagtgaatagaaagtgagagggaagaaagaagtatatttataaaatgacatacatgcc 179  Q
    || |||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||    
T  14062168 tgtagtgaaagtgaatagaaaatgagaggacagaaagaagtatacttataaaatgacatacatgcc 14062103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 32157528 - 32157404
Alignment:
Q  24 aaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaa 123  Q
    |||||||||||||||  | |||||||| |||||||||||||||||||||| | | || | |||||| | || ||||| || |||||||||   |||||||    
T  32157528 aaaggaaagaaagtaaaaggaaagaatgtttaaggaatgaaagtgagtggtaagagagtggaaagttagatgattttttgattgtttggtatgagtgaaa 32157429  T
Q  124 gtgaatagaaagtgagagggaagaa 148  Q
    ||||| ||||||||| ||| |||||    
T  32157428 gtgaaaagaaagtgaaaggaaagaa 32157404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 40414134 - 40414008
Alignment:
Q  25 aaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaag 124  Q
    ||||||||||||||    |||||||| |||||||||||||||||| ||||| | || |||||||| | || ||||| | ||||||| ||  |||||| ||    
T  40414134 aaggaaagaaagtaaatggaaagaatgtttaaggaatgaaagtgaatggaaagagagtagaaagtaagatgatttttttgttgtttagtataagtgatag 40414035  T
Q  125 tgaatagaaagtgagagggaagaaaga 151  Q
    |||| ||||||||| ||| ||||||||    
T  40414034 tgaaaagaaagtgaaaggaaagaaaga 40414008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 48379928 - 48379837
Alignment:
Q  77 gtgaatagaaagtgatataattttatggttgtttggttgaagtgaaagtgaatagaaagtgagagggaagaaagaagtatatttataaaatgac 170  Q
    |||| |||||||||| |||||||| |||||||||||| | |||||||||||||  ||| || |||| |||||||| |||||||||  |||||||    
T  48379928 gtgagtagaaagtgagataattttttggttgtttggtaggagtgaaagtgaat--aaattgtgaggaaagaaagatgtatatttagtaaatgac 48379837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 23255106 - 23254960
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataatttt-atggttgtttggtt 114  Q
    |||||||  ||||||| ||||||||| |||||| |  | |||||||||| ||| || ||| |||||| |||||| | || ||||| || |||| ||||||    
T  23255106 agaaagtataaggaaataaagtatgaggaaagattgatgaaggaatgaatgtgtgtagaaagtgaatggaaagtaagatgattttcatagttgcttggtt 23255007  T
Q  115 gaagtgaaagtgaatagaaagtgagagggaagaaagaagtatattta 161  Q
      ||||||||||| || ||||||| ||| ||||||||  ||||||||    
T  23255006 tgagtgaaagtgattaaaaagtgaaaggaaagaaagatttatattta 23254960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 33132351 - 33132406
Alignment:
Q  82 tagaaagtgatataattttatggttgtttggttgaagtgaaagtgaatagaaagtg 137  Q
    |||||||||| || |||| ||||||||||||||  ||||||||| |||||||||||    
T  33132351 tagaaagtgagatgatttgatggttgtttggttatagtgaaagtaaatagaaagtg 33132406  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 36957758 - 36957801
Alignment:
Q  26 aggaaagaaagtatgatgaaagaatatttaaggaatgaaagtga 69  Q
    |||||||||||||  ||||||||||| |||||||||||||||||    
T  36957758 aggaaagaaagtaaaatgaaagaataattaaggaatgaaagtga 36957801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 51923566 - 51923532
Alignment:
Q  43 gaaagaatatttaaggaatgaaagtgagtggaatg 77  Q
    |||||||| ||||||||||||||||||||||||||    
T  51923566 gaaagaatgtttaaggaatgaaagtgagtggaatg 51923532  T

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Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 39566791 - 39566948
Alignment:
Q  14 agagaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggt 113  Q
    ||||||||| |||||||||||||||||| |||||||| || |||||||||||||||||| ||||||| |  |||||||||| |||||  |||||||||||    
T  39566791 agagaaagtgaaaggaaagaaagtatgaggaaagaatgttgaaggaatgaaagtgagtgaaatgtgagtgaaaagtgatatgattttgcggttgtttggt 39566890  T
Q  114 tgaagtgaaagtgaatagaaagtgagagggaagaaagaagtatatttataaaatgaca 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  39566891 tgaagtgaaagtgaatagaaagtgagaggaaagaaagaagtatacttgtaaaatgaca 39566948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 17785151 - 17785298
Alignment:
Q  25 aaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaag 124  Q
    ||||||||||||||||| |||||| | || ||||||||||||||||| ||| ||   | ||||||||||| |||||||||||||||||| | |||||||     
T  17785151 aaggaaagaaagtatgaggaaagattgttaaaggaatgaaagtgagtagaaagtttgtggaaagtgatatgattttatggttgtttggtaggagtgaaaa 17785250  T
Q  125 tgaatagaaagtgagagggaagaaagaagtatatttataaaatgacat 172  Q
    |||| |||||| |||||| ||||| ||  | |||||| ||||||||||    
T  17785251 tgaaaagaaagggagaggaaagaatgatatgtatttaaaaaatgacat 17785298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 11943027 - 11943173
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatg-gttgtttggtt 114  Q
    |||||||  ||||||||| |||| || |||||| | || || |||||||||||||| |||  ||||| |||||| | || ||||| |  ||||||||||     
T  11943027 agaaagtataaggaaagatagtaagaggaaagattgttaaaagaatgaaagtgagtagaaattgaatggaaagttagatgatttttttagttgtttggta 11943126  T
Q  115 gaagtgaaagtgaatagaaagtgagagggaagaaagaagtatattta 161  Q
     ||||||||||| || || ||||||||| |||||||| |||| ||||    
T  11943127 taagtgaaagtgcatggatagtgagaggaaagaaagatgtatgttta 11943173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 13637836 - 13637739
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggt 113  Q
    ||||||| |||||||||| |||| || |||||| | || |||||||||||||| || ||| |||||| |||||||| || ||| | | ||||||||||    
T  13637836 agaaagtgaaaggaaagatagtaagaggaaagattgttgaaggaatgaaagtgggtagaaagtgaatggaaagtgagatgattatttagttgtttggt 13637739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 13738249 - 13738152
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggt 113  Q
    ||||||| |||||||||| |||| || |||||| | || |||||||||||||| || ||| |||||| |||||||| || ||| | | ||||||||||    
T  13738249 agaaagtgaaaggaaagatagtaagaggaaagattgttgaaggaatgaaagtgggtagaaagtgaatggaaagtgagatgattatttagttgtttggt 13738152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 30203332 - 30203229
Alignment:
Q  82 tagaaagtgatataatt-ttatggttgtttggttgaagtgaaagt-gaatagaaagtgagagggaagaaagaagtatatttataaaatgacatacatgcc 179  Q
    |||||||||| || ||| |||||||||||||||  ||| |||||| ||||||||||| ||||| ||||||||  ||| ||||| || ||||||| || ||    
T  30203332 tagaaagtgagatgattgttatggttgtttggtaaaagagaaagtagaatagaaagtaagaggaaagaaagatatatctttattaattgacataaatacc 30203233  T
Q  180 cttg 183  Q
    ||||    
T  30203232 cttg 30203229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 39029083 - 39028927
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataatt-ttatggttgtttggt- 113  Q
    |||||||  |||||||||||||| || |||||| |  |||||||||||| |||||| ||| || ||| ||||||   |||||| || | ||||||||||     
T  39029083 agaaagtataaggaaagaaagtaagaggaaagattggttaaggaatgaatgtgagtagaaagtaaatggaaagtatgataattattttagttgtttggta 39028984  T
Q  114 tgaagtgaaagtgaatagaaagtgagagggaagaaagaagtatatttataaaatgaca 171  Q
    |||| |||| |||| |||||||||| ||| |||| | ||||  ||||| |||||||||    
T  39028983 tgaa-tgaatgtgagtagaaagtgaaaggaaagatataagtgcatttagaaaatgaca 39028927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 4922185 - 4922046
Alignment:
Q  43 gaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaagtgaatagaaagtgagagg 142  Q
    |||||||| || || |||||||||||| | |||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||      
T  4922185 gaaagaatgttgaaagaatgaaagtgaatagaatgtgattggaaagtgatatgattttgtggttgtttggttgaagtgaaagtgaatagaaaatgagaaa 4922086  T
Q  143 gaagaaagaagtatatttataaaatgacatacatgccctt 182  Q
     |||||||||||||| ||||||||||||||||||||||||    
T  4922085 aaagaaagaagtatacttataaaatgacatacatgccctt 4922046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 8568676 - 8568589
Alignment:
Q  84 gaaagtgatataattttatggttgtttggttgaagtgaaagtgaatagaaagtgagagggaagaaagaagtatatttataaaatgaca 171  Q
    |||||||| || ||||| || ||||||||| |||||||||||||||||||||||| ||| |||||||   ||||||||  ||||||||    
T  8568676 gaaagtgaaatgattttttgattgtttggtagaagtgaaagtgaatagaaagtgaaaggaaagaaagtgatatatttagtaaatgaca 8568589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 12005516 - 12005653
Alignment:
Q  25 aaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgata-taattttatggttgtttggttgaagtgaaa 123  Q
    ||||||||| |||| || |||||| | || ||||||||||||||||| ||| |||||| |||||| | |  | |||| | ||||||||||  ||||||||    
T  12005516 aaggaaagatagtaagaggaaagattgttaaaggaatgaaagtgagtagaaagtgaatggaaagttagacgatttttttagttgtttggtataagtgaaa 12005615  T
Q  124 gtgaatagaaagtgagagggaagaaagaagtatattta 161  Q
    ||| || || ||||||||| |||||||| |||| ||||    
T  12005616 gtgcatggatagtgagaggaaagaaagatgtatgttta 12005653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 6231337 - 6231204
Alignment:
Q  29 aaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatat-aattttatggttgtttggttgaagtgaaagtga 127  Q
    |||||||||| || |||||| | || ||||||||||| ||||| ||| |||||| |||||| | || | |||| ||||||||||||   ||||||||||     
T  6231337 aaagaaagtaagaggaaagattgttgaaggaatgaaaatgagtagaaagtgaatggaaagttagatgatttttttggttgtttggtatgagtgaaagtgg 6231238  T
Q  128 atagaaagtgagagggaagaaagaagtatattta 161  Q
     ||||   || |||| |||||||| |||||||||    
T  6231237 ctagattatgtgaggaaagaaagatgtatattta 6231204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 24388452 - 24388388
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtga 80  Q
    ||||||| |||||||||||||||  | |||||| | || ||| ||||||||||||| ||||||||    
T  24388452 agaaagtgaaaggaaagaaagtaaaaggaaagattgttgaagaaatgaaagtgagtagaatgtga 24388388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 25102429 - 25102266
Alignment:
Q  14 agagaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatgg-ttgtttgg 112  Q
    ||||||||| |||||||||| ||||| | |||||||| || || |||||||||||||| |||||||| | ||||||||||| ||||| ||| ||||||||    
T  25102429 agagaaagtgaaaggaaagatagtataaggaaagaatgttgaaagaatgaaagtgagtagaatgtgagtggaaagtgatatgattttctggtttgtttgg 25102330  T
Q  113 ttgaagtgaaagtgaatagaaagtgagagggaagaaagaagtata-tttataaaatgacataca 175  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||| || | |||||||||||||    
T  25102329 ttgaagtgaaagtgaatagaaaatgagaggaaagaaagatgtatacttgaaaaaatgacataca 25102266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 36031091 - 36030921
Alignment:
Q  14 agagaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatata-attttatggttgtttgg 112  Q
    ||||||||| ||||||||||||||| ||  ||||||||||  |||||||||||||||| |||  ||  | |||||||| ||  ||||| | |||||||||    
T  36031091 agagaaagtgaaaggaaagaaagtaagagaaaagaatattgtaggaatgaaagtgagtagaaaatgtgtggaaagtgagattgattttgttgttgtttgg 36030992  T
Q  113 ttg-aagtgaaagtgaatagaaagtgagagggaagaaagaagtatatttataaaatgacatacatgccctt 182  Q
    ||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  36030991 ttttaagtgaaagtgaatagaaagtgagaagaaagaaagaagtatatttataaaatgacatacatgccctt 36030921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 33698649 - 33698514
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttg 115  Q
    ||||||| |||||||||| |||| || |||||| |||| ||||||||||||||||| |||||||||| |||||||| || || || | ||||||||||      
T  33698649 agaaagtgaaaggaaagatagtaagaggaaagattattgaaggaatgaaagtgagtagaatgtgaatggaaagtgagatgatattttagttgtttggtat 33698550  T
Q  116 aagtgaaagtgaatagaaagtgagagggaagaaaga 151  Q
    || |||||||||  ||||| ||| ||| ||||||||    
T  33698549 aaatgaaagtgagaagaaattgaaaggaaagaaaga 33698514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 2735488 - 2735613
Alignment:
Q  24 aaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaa 123  Q
    |||||||||||| ||  | |||||| | ||||| ||||||||||||||||||   || |||||||| | || ||||| ||||||||||||   ||||| |    
T  2735488 aaaggaaagaaaataaaaagaaagattgtttaaagaatgaaagtgagtggaa--agagtagaaagtaaaatgattttttggttgtttggtatgagtgata 2735585  T
Q  124 gtgaatagaaagtgagagggaagaaaga 151  Q
    ||||| ||||||||  ||| ||||||||    
T  2735586 gtgaaaagaaagtgtaaggaaagaaaga 2735613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 30854449 - 30854557
Alignment:
Q  43 gaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaagtgaatagaaagtgagagg 142  Q
    ||||||||  ||||||||||||||| ||||||| | || |||||||| | ||  |||| ||||||||||||   ||||| |||||| ||||||||  |||    
T  30854449 gaaagaatgcttaaggaatgaaagtaagtggaaagagagtagaaagtaagatggttttttggttgtttggtattagtgatagtgaaaagaaagtgcaagg 30854548  T
Q  143 gaagaaaga 151  Q
     ||||||||    
T  30854549 aaagaaaga 30854557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 47421102 - 47421008
Alignment:
Q  55 aaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaagtgaatagaaagtgagagggaagaaa 149  Q
    |||||||| |||||  | ||| |||||| |||||||| || ||||| | ||||||||||   |||||||||||||  ||||||||||| ||||||    
T  47421102 aaggaatggaagtgtatagaaagtgaatggaaagtgagatgattttttagttgtttggtatgagtgaaagtgaatcaaaagtgagaggaaagaaa 47421008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 28132398 - 28132293
Alignment:
Q  43 gaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaagtgaatagaaagtgagagg 142  Q
    ||||||| || |||||| ||||||||| | |||   ||| ||||||||| || ||| | ||||||||||||  |  |||||||||| |||||||||||||    
T  28132398 gaaagaaaatataaggattgaaagtgaatagaaaaggaaaagaaagtgagatgattgtttggttgtttggtata--tgaaagtgaaaagaaagtgagagg 28132301  T
Q  143 gaagaaag 150  Q
     |||||||    
T  28132300 aaagaaag 28132293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 50406796 - 50406639
Alignment:
Q  14 agagaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggt 113  Q
    ||||||||| |||||||||||||||| | |||||||| || |||||||||||||||||||||           |||||||| ||||| ||||||||||||    
T  50406796 agagaaagtgaaaggaaagaaagtataaggaaagaatgttgaaggaatgaaagtgagtggaa-----------agtgatatgattttgtggttgtttggt 50406708  T
Q  114 tgaagtgaaagtgaatagaaagtgagagggaagaaagaagtatatttataaaatgacatacatgccctt 182  Q
    | ||||||||| ||||||||| ||||||  ||||||||  ||||||| |||||||||||||||||||||    
T  50406707 ttaagtgaaagagaatagaaaatgagagaaaagaaagagatatatttgtaaaatgacatacatgccctt 50406639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 46970070 - 46970194
Alignment:
Q  24 aaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaa 123  Q
    |||||||||||||||  ||||||||||  | ||||||||||||||||||||||| ||   |||||| | || ||||| ||||||||||||   ||||| |    
T  46970070 aaaggaaagaaagtaaaatgaaagaatgctcaaggaatgaaagtgagtggaatgggagaggaaagtaagatgattttttggttgtttggtatgagtgata 46970169  T
Q  124 gtgaatagaaagtgagagggaagaa 148  Q
     |||| ||||||||| ||| |||||    
T  46970170 atgaaaagaaagtgaaaggaaagaa 46970194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 6956033 - 6955936
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggt 113  Q
    ||||||| |||||||||| |||| || |||||| | || ||||||||||||||||| ||| |||||| ||||| || || ||| | | ||||||||||    
T  6956033 agaaagtgaaaggaaagatagtaagaggaaagattgttgaaggaatgaaagtgagtagaaagtgaatggaaagagagatgattatttagttgtttggt 6955936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 41055824 - 41055749
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtga 91  Q
    ||||||| |||||||||| |||| || |||||| | || |||||||||||| |||| ||| |||||| ||||||||    
T  41055824 agaaagtgaaaggaaagatagtaagaggaaagattgttgaaggaatgaaagagagtagaaagtgaatggaaagtga 41055749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 49032936 - 49032835
Alignment:
Q  27 ggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaagtg 126  Q
    |||||||||| | || |||||||| || ||||||||||||||| | ||| |||| | |||||||| || ||| | | |||||||||| |  |||||||||    
T  49032936 ggaaagaaagaaagaggaaagaatgttaaaggaatgaaagtgaatagaaagtgagtggaaagtgagatgattgtttagttgtttggtaggggtgaaagtg 49032837  T
Q  127 aa 128  Q
    ||    
T  49032836 aa 49032835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 37552901 - 37552778
Alignment:
Q  25 aaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaag 124  Q
    |||||||||| ||| || |||||| | || ||||||||||| ||||| ||| ||   | ||||||||||| ||||||||||| |||||| | ||||||||    
T  37552901 aaggaaagaaggtacgaggaaagattgttaaaggaatgaaaatgagtagaaagtttgtggaaagtgatatcattttatggttatttggtaggagtgaaag 37552802  T
Q  125 tgaatagaaagtgagagggaagaa 148  Q
    |||| |||||| |||||| |||||    
T  37552801 tgaaaagaaagggagaggaaagaa 37552778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 37070986 - 37071131
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataatttt-atggttgtttggtt 114  Q
    |||||||  ||||||||||||||||| |||||| |  | |||||||||| |||||| ||| |||||| |||||| | || ||||| || |||||||||||    
T  37070986 agaaagtataaggaaagaaagtatgaggaaagattgatgaaggaatgaatgtgagtagaaagtgaatggaaagtaagatgattttcatagttgtttggtt 37071085  T
Q  115 gaagtgaaagtgaatagaaagtgagagggaagaaagaagtatattta 161  Q
      |||| |||||| || ||||||| ||| ||||||||  ||||||||    
T  37071086 tgagtg-aagtgattaaaaagtgaaaggaaagaaagatttatattta 37071131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 47507390 - 47507320
Alignment:
Q  43 gaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggt 113  Q
    |||||||| |||||||||||||||||||||||| | || |||||||| | || ||||| ||||||||||||    
T  47507390 gaaagaatgtttaaggaatgaaagtgagtggaaagagagtagaaagtaagatgattttttggttgtttggt 47507320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 23980939 - 23980819
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttg 115  Q
    ||||||||||||||||||||||   | |||||| | || | |||| |||| | ||  |||  ||| |||||||||| || |||| ||||||||||||||     
T  23980939 agaaagttaaaggaaagaaagtgaaaggaaagattgttaagggaaagaaaataagatgaaaatgagtagaaagtgagatgatttgatggttgtttggtta 23980840  T
Q  116 aagtgaaagtgaatagaaagt 136  Q
     ||||||||||||||||||||    
T  23980839 tagtgaaagtgaatagaaagt 23980819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 38459192 - 38459117
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtga 91  Q
    ||||||| |||||||||| |||| || |||||| | || |||||||||||| |||| ||| |||||| ||||||||    
T  38459192 agaaagtgaaaggaaagatagtaagaggaaagattgttgaaggaatgaaagagagtagaaagtgaatggaaagtga 38459117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 1049071 - 1048978
Alignment:
Q  82 tagaaagtgatataatt-ttatggttgtttggttgaagtgaaagt-gaatagaaagtgagagggaagaaagaagtatatttataaaatgacata 173  Q
    |||||||||| || ||| ||||||||||||||| |||| |||||| ||||||||||| ||||| |||| |||  ||| ||||| || |||||||    
T  1049071 tagaaagtgaaatgattgttatggttgtttggtagaagagaaagtagaatagaaagtaagaggaaagatagatctatgtttattaattgacata 1048978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 5958 - 5832
Alignment:
Q  25 aaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaag 124  Q
    ||||||||||||||    |||||||| |||||| ||||||||||| ||||| | || |||||||| | || ||||| | ||||||||||  |||||| ||    
T  5958 aaggaaagaaagtaaatggaaagaatgtttaagaaatgaaagtgaatggaaagagagtagaaagtaagatgatttttttgttgtttggtataagtgatag 5859  T
Q  125 tgaatagaaagtgagagggaagaaaga 151  Q
    |||| ||||||||| ||| ||||||||    
T  5858 tgaaaagaaagtgaaaggaaagaaaga 5832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 27892747 - 27892601
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataatttt-atggttgtttggtt 114  Q
    |||||||  ||||||||| ||||||| |||||| |  | |||||||||| |||||| ||| |||||| |||||| | || ||||| || |||||||||||    
T  27892747 agaaagtataaggaaagagagtatgaggaaagattgatgaaggaatgaatgtgagtagaaagtgaatggaaagtaagatgattttcatagttgtttggtt 27892648  T
Q  115 gaagtgaaagtgaatagaaagtgagagggaagaaagaagtatattta 161  Q
       |||||||||| || ||||||| ||| ||||||||  ||||||||    
T  27892647 tgtgtgaaagtgattaaaaagtgaaaggaaagaaagatttatattta 27892601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 39730888 - 39731012
Alignment:
Q  24 aaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaa 123  Q
    |||||||||||||||  | |||| ||| ||||||||||||||| |||||||||| ||   |||||| | || ||||| ||||||||||||   ||| | |    
T  39730888 aaaggaaagaaagtaaaaggaaataatgtttaaggaatgaaagcgagtggaatgagagaggaaagtaagatgattttttggttgtttggtatgagtaata 39730987  T
Q  124 gtgaatagaaagtgagagggaagaa 148  Q
    ||||| ||||||||| ||| |||||    
T  39730988 gtgaaaagaaagtgaaaggaaagaa 39731012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 35048316 - 35048241
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtga 91  Q
    |||||||||||||||||| ||||||  |||||| | || |||||||||||| |||| ||| |||||| ||||||||    
T  35048316 agaaagttaaaggaaagatagtatgtggaaagattgttgaaggaatgaaagagagtagaaagtgaatggaaagtga 35048241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 40772192 - 40772065
Alignment:
Q  24 aaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataatt-ttatggttgtttggttgaagtgaa 122  Q
    ||||||||||||||| || |||||| | || |||||||||||||||   ||| |||||| |||||||| || ||| || |||||||||  | | ||||||    
T  40772192 aaaggaaagaaagtaagaggaaagattgttaaaggaatgaaagtgaagagaaagtgaatggaaagtgagatgattattttggttgtttattaggagtgaa 40772093  T
Q  123 agtgaatagaaagtgagagggaagaaag 150  Q
    ||||   ||||||||||||| |||||||    
T  40772092 agtggtgagaaagtgagaggaaagaaag 40772065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 6150089 - 6150187
Alignment:
Q  16 agaaagttaaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggtt 114  Q
    ||||||| |||||||||| ||||  | |||||| | || ||||||||||||||||| ||| |||| | |||||||| || ||| | | |||||||||||    
T  6150089 agaaagtgaaaggaaagatagtaaaaggaaagattgttgaaggaatgaaagtgagtagaaagtgagtggaaagtgaaatgattatttagttgtttggtt 6150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 6150066 - 6149965
Alignment:
Q  24 aaaggaaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaa 123  Q
    ||||||||||||||  || |||||||  || |||||| |||||| ||  ||| |||| |||||||||| || ||||  |||||||||||||  |||||||    
T  6150066 aaaggaaagaaagttagaggaaagaaggttaaaggaaagaaagtaagaagaaagtgagtagaaagtgagatgatttgttggttgtttggttatagtgaaa 6149967  T
Q  124 gt 125  Q
    ||    
T  6149966 gt 6149965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 5606872 - 5606730
Alignment:
Q  29 aaagaaagtatgatgaaagaatatttaaggaatgaaagtgagtggaatgtgaatagaaagtgatataattttatggttgtttggttgaagtgaaagtgaa 128  Q
    ||||||||||  | |||||| | || ||||||||||||||||| ||| |||  ||||| |||| || ||| | |||||||||| |  ||||||||||||     
T  5606872 aaagaaagtaaaaggaaagattgttgaaggaatgaaagtgagtagaaagtgggtagaatgtgagatgattatttggttgtttgttataagtgaaagtgag 5606773  T
Q  129 tagaaagtgagagggaagaaagaagtatatttataaaatgaca 171  Q
     ||||||||| ||| ||||| ||   |||||||| ||||||||    
T  5606772 aagaaagtgaaaggaaagaatgacacatatttattaaatgaca 5606730  T

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