View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4094_low_49 (Length: 238)
Name: NF4094_low_49
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_49 |
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| [»] chr5 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4270001 - 4269781
Alignment:
| Q |
18 |
caatcagctttaactttgattaaggaaggagttccgacaactcacccctatgcacctattattgacctcattaagagatttattgattatccttggcttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270001 |
caatcagctttaactttgattaaggaaggagttccgacaactcacccctatgcatttgttattgacctcattaagagatttattgattatccttggcttt |
4269902 |
T |
|
| Q |
118 |
tgcctttccatcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatg |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |
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| T |
4269901 |
tgtctttccatcattcctcgagggaaggtaatagtaatgcggattggttagcgaaatacatagcaagattggaaggtgattcgattgcttggaggtaatg |
4269802 |
T |
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| Q |
218 |
tccaacacctctttcgactac |
238 |
Q |
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|||||| |||||||||||||| |
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| T |
4269801 |
tccaactcctctttcgactac |
4269781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 1583042 - 1583256
Alignment:
| Q |
24 |
gctttaactttgattaaggaaggagttccgacaactcacccctatgcacctattattgacctcattaagagatttattgattatccttggcttttgcctt |
123 |
Q |
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||||| ||||||||||||| | ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
1583042 |
gctttgactttgattaagggacgagttatgacaactcacctctatgcatctattattgacctcattaagagatttattgattatccttggctattgactt |
1583141 |
T |
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| Q |
124 |
tccatcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatgtccaac |
223 |
Q |
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| T |
1583142 |
tccatcattccttgagggaaggtaataactatgcggattggttagcaaaatacagagcaagattggagggtgaatcgatcgtttggagacaatgtctaac |
1583241 |
T |
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| Q |
224 |
acctctttcgactac |
238 |
Q |
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||||||||| |||| |
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| T |
1583242 |
tcctctttcggctac |
1583256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 22081681 - 22081460
Alignment:
| Q |
18 |
caatcagctttaactttgattaaggaaggagttccgacaactcacccctatgcacctattattgacctcatt-aagagatttattgattatccttggctt |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| |||||||||||| |||||||||||||| |
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| T |
22081681 |
caatcagctttgactttgattaaggaaggagttccgacaactcactcatatgcacctgttattgacctcattcaagagatttatttattatccttggctt |
22081582 |
T |
|
| Q |
117 |
ttgcctttccatcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaat |
216 |
Q |
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||| ||||||||||||| | |||||||||||||| |||| |||| |||||||||||| | ||||||||| || | |||||| || ||||||||| ||| |
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| T |
22081581 |
ttgactttccatcattcgttgagggaaggtaatatctgtgcagattagttagcgaaatacatagcaagattagaggatgactcaatcgcttggaggcaat |
22081482 |
T |
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| Q |
217 |
gtccaacacctctttcgactac |
238 |
Q |
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|| ||| ||||||||||||| |
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| T |
22081481 |
gttaaacttctctttcgactac |
22081460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 19224359 - 19224565
Alignment:
| Q |
32 |
tttgattaaggaaggagttccgacaactcacccctatgcacctattattgacctcattaagagatttattgattatccttggcttttgcctttccatcat |
131 |
Q |
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||||||||||||| ||||| ||||||||||| | ||||||||| |||||||||||||| |||| ||||||||||| |||||||| ||| ||||||||||| |
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| T |
19224359 |
tttgattaaggaaagagtttcgacaactcactcttatgcacctgttattgacctcattgagaggtttattgattaaccttggctcttgtctttccatcat |
19224458 |
T |
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| Q |
132 |
tcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatgtccaacacctcttt |
231 |
Q |
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|||| |||||||||||||||| ||||||||| ||| | |||||| ||| ||||||||| ||||||||||| |||||||| |||||||||| ||||||| |
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| T |
19224459 |
tccttgagggaaggtaatagttgtgcggattaattaacaaaatatggagtaagattggagggtgactcgatcgcttggagacaatgtccaactcctcttt |
19224558 |
T |
|
| Q |
232 |
cgactac |
238 |
Q |
| |
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||||||| |
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| T |
19224559 |
cgactac |
19224565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1963201 - 1962981
Alignment:
| Q |
18 |
caatcagctttaactttgattaaggaaggagttccgacaactcacccctatgcacctattattgacctcattaagagatttattgattatccttggcttt |
117 |
Q |
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|||||||||| ||||||||||||||||||||||| |||| ||||| ||| ||| | |||||| |||||||| | ||||||| ||||| |||||| | |
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| T |
1963201 |
caatcagcttggactttgattaaggaaggagttccaacaatccacccttatacacatgttattggcctcattatttggtttattggttatctttggctct |
1963102 |
T |
|
| Q |
118 |
tgcctttccatcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatg |
217 |
Q |
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|| ||||||||||||||| |||||||| |||||| ||||| || ||||||| ||| | |||||||||||| |||||| | ||||||||||| |||| |
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| T |
1963101 |
tgtctttccatcattccttgagggaagttaatagatgtgcgaatcaattagcgatatacaaagcaagattggagggtgacgcaattgcttggagtcaatg |
1963002 |
T |
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| Q |
218 |
tccaacacctctttcgactac |
238 |
Q |
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| |||||||| |||||||||| |
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| T |
1963001 |
ttcaacacctttttcgactac |
1962981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 39334784 - 39334695
Alignment:
| Q |
18 |
caatcagctttaactttgatt-aaggaaggagttccgacaactcacccctatgcacctattattgacctcattaagagatttattgatta |
106 |
Q |
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|||||| |||| ||||||||| ||||||||||||||| || |||| || ||||||| | ||||||||||||||||||||||||||||||| |
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| T |
39334784 |
caatcaactttgactttgatttaaggaaggagttccggcatctcatccttatgcacttgttattgacctcattaagagatttattgatta |
39334695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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