View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_5 (Length: 560)
Name: NF4094_low_5
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 196 - 484
Target Start/End: Complemental strand, 9499596 - 9499308
Alignment:
| Q |
196 |
accaaatacggtaaatctaaacacagctgtttcacttagaattatttgcagtctgttgggtctgaacagttccaacaccggattttgctgcttttaaccc |
295 |
Q |
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| T |
9499596 |
accaaatacggtaaatctaaacacagctgtttcacttagaattatttgcagtctgttgggtctgaacagttccaacgctggattttgctgcttttaaccc |
9499497 |
T |
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| Q |
296 |
aatttcttatggggataaaatcaccataaaacaatggttttgtgatggtctaatccaatttctcaggatatgtttactaaaaagtaggggagcatgcggc |
395 |
Q |
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| T |
9499496 |
aatttcttatggggataaaatcaccataaaacaatggttttgtgatggtctaatccaatttctaaagatatgtttactaaaaagtaggggagcatgcggc |
9499397 |
T |
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| Q |
396 |
tgaattataagaaaacatcatccaacttaaaatcatgcaatgtataaatatagcattgggctattttgtgtagtaattctttccataat |
484 |
Q |
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| T |
9499396 |
tgaattataagaaaacatcatccaacttaaaatcatgcaatgtataaatatagcattgggctattttgtgtagtaattctttccataat |
9499308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 9499736 - 9499594
Alignment:
| Q |
20 |
gtgggtcatgcagaagtggggaagtaattccccattttacatgcctgatgaaataacggtcacgcatcactccttggatgtgttgggcagcggctacatt |
119 |
Q |
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| T |
9499736 |
gtgggtcatgcagaaatggggaagtaattccccattttacatgcctgatgaaataacggtcacgcaccactccttggatgcattggacagcggctacatt |
9499637 |
T |
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| Q |
120 |
tagctacccaaaatcggtgcaaccaactaccgtggcagagacc |
162 |
Q |
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| T |
9499636 |
tagctacccaaaatcagtgcaaccaactaccgtggcagagacc |
9499594 |
T |
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