View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_52 (Length: 231)
Name: NF4094_low_52
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38932997 - 38932787
Alignment:
| Q |
1 |
acaatgtctttgttgataatatagaagatgaactcacatttatctaccttaaccatgagaagatgaactcacagtcacattcgttgaacttgtnnnnnnn |
100 |
Q |
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| T |
38932997 |
acaatgtctttgttgatattatataagatgaactcacatatatctaccttaaccatgagaagatgaactcaca------ttcgttgaacttgtaaaaaaa |
38932904 |
T |
|
| Q |
101 |
-ttggcaccgctgcggcattaatgaaagcatgatgaggtgtaagaatgaagggtttgatatgcatgcatggtgaagaatgtccacattgcttcacttacg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38932903 |
attggcaccgctgcggcattaatgaaagcatgatgaggtgtaagaatgaagggtttgatatgcatgcatggtgaagaatgtccacattgcttcacttacg |
38932804 |
T |
|
| Q |
200 |
tgtccatcgtttaacct |
216 |
Q |
| |
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||||||||||||||||| |
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| T |
38932803 |
tgtccatcgtttaacct |
38932787 |
T |
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