View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_low_6 (Length: 495)
Name: NF4094_low_6
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 53636531 - 53636790
Alignment:
| Q |
21 |
gctggtactgatgggagtgctacccaaatacccattgaccctctctctatgtcacaagatgtcaaggcag-------------tctctatttctacctgg |
107 |
Q |
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| T |
53636531 |
gctggtactgatgggagtgctacccaaatacccattgaccctct----atgtcacaagatgtcaaggcagccaccatatgtagtctctatttctacctgg |
53636626 |
T |
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| Q |
108 |
tttttgaactatctaaacaatttttcaccattcaccataattaatttatttgaatatacttgttttacagtttgatgcccctatagtatcctctctgttt |
207 |
Q |
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| T |
53636627 |
tttttgaactatctaaacaatttttcaccattcaccataattaatttatttgaatatacttggtttacagtttgatgcccctatagtatcctctctgttt |
53636726 |
T |
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| Q |
208 |
ataactgtattagaaggatgaagagtttgttagatttttgtttctttcaaaagagcttatagct |
271 |
Q |
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| T |
53636727 |
atagctgtattagaaggatgaagagtttgttagatttttgtttctttcaaaagagcttatagct |
53636790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 288 - 483
Target Start/End: Original strand, 53636839 - 53637030
Alignment:
| Q |
288 |
gatggagcattatacacaaaatt-aagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctctttagttaaactgagaaata |
386 |
Q |
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| T |
53636839 |
gatggagcattatacacaaaatttaagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctctttagttaaaccgagaaata |
53636938 |
T |
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| Q |
387 |
tccactaattgaaagattctattgttagatcctctaccctctatgnnnnnnntactttctattctatggtcattcaacatgaaagacagaataatct |
483 |
Q |
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| T |
53636939 |
tccactaattgaaagattctattgttagatcctctaccctctatgaaaaaaatact-----ttctatggtcattcaacatgaaagacagaataatct |
53637030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 48333446 - 48333375
Alignment:
| Q |
164 |
tacttgttttacagtttgatgcccctatagtatcctctctgtttataactgtattagaaggatgaagagtttgt |
237 |
Q |
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| T |
48333446 |
tacttgttttacagtttgatgcccctatattat--gctctgtttatggctgtattaatgggatgaagggtttgt |
48333375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 48333366 - 48333292
Alignment:
| Q |
293 |
agcattatacacaaaattaagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctcttt |
369 |
Q |
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| T |
48333366 |
agcattatacacaaatataagtatttgtcactca--gacttggaggataactttttgcttgcctattatatctcttt |
48333292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 48333596 - 48333547
Alignment:
| Q |
15 |
ctctctgctggtactgatgggagtgctacccaaatacccattgaccctct |
64 |
Q |
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| T |
48333596 |
ctctctgctggtactgataggggtactgcccaaatacccattggccctct |
48333547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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