View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_high_21 (Length: 246)
Name: NF4095_high_21
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 50019393 - 50019627
Alignment:
| Q |
1 |
ttcaatttaagtaatctctattgagcatataaacatgcagtagcagaaaataggtggacagtcaccaaaacacagtcaccaaaacaagtaaaattaaaac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
50019393 |
ttcaatttaagtaatctctattgaacatataaacatgcagtaacagaaaataggtggacattcaccaaaaca--------------agtaaaattaaaac |
50019478 |
T |
|
| Q |
101 |
aagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcgactttgctgtttttccagacaacttttg |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
50019479 |
aagtactctaaataccaactcatatacctgtgaacttttttctttacgtggagcgcaactagatgtagcgcgactttgctggttttccagaaaacttttg |
50019578 |
T |
|
| Q |
195 |
tgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgctt |
244 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
50019579 |
tgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgctt |
50019627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 11474168 - 11473992
Alignment:
| Q |
73 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
166 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
11474168 |
cagtcaccaaaacaagtaaaattaaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcg |
11474069 |
T |
|
| Q |
167 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgctt |
244 |
Q |
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| T |
11474068 |
actatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgctt |
11473992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 28245883 - 28246044
Alignment:
| Q |
73 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttctggagcgcggctagatgtagcgcgactttg |
172 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| || ||||||||| || |
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| T |
28245883 |
cagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttttttctt---------taggtggagcgcgactatg |
28245973 |
T |
|
| Q |
173 |
ctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgctt |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |
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| T |
28245974 |
ctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggttgta-ccctgaacccctttgctt |
28246044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 25382281 - 25382105
Alignment:
| Q |
73 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25382281 |
cagtcaccaaaacaagtaaaattaaaacaagtactttaaataccaactcatatacctgtgaacttttttctttaggtggagcgcggctagatgtagcgcg |
25382182 |
T |
|
| Q |
167 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgctt |
244 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| |
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| T |
25382181 |
actatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccttgaacccctttgctt |
25382105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 38252698 - 38252874
Alignment:
| Q |
73 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
166 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
38252698 |
cagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcg |
38252797 |
T |
|
| Q |
167 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgctt |
244 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
38252798 |
actatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgctt |
38252874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 43156844 - 43156668
Alignment:
| Q |
73 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
166 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
43156844 |
cagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcg |
43156745 |
T |
|
| Q |
167 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgctt |
244 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
43156744 |
actatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgctt |
43156668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 19307560 - 19307736
Alignment:
| Q |
73 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
166 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
19307560 |
cagtcaccaaaacaagtaaaaataaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcg |
19307659 |
T |
|
| Q |
167 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgctt |
244 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
19307660 |
actatgctgtttttccaaacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgctt |
19307736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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