View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_high_25 (Length: 237)
Name: NF4095_high_25
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30360956 - 30361176
Alignment:
| Q |
1 |
aaatcaatcatcaaacaaaattacaagctccagctaa-tttattttgcttgaaattaaagatggttagaagaggggttcctctttgcgtgcagtgtggca |
99 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30360956 |
aaatcaatcatcaaacaaaattacaagctctagctaaatttattttgcttgaaattaaagatggttagaagaggggttcctctttgcgtgcagtgtggca |
30361055 |
T |
|
| Q |
100 |
caagaagcaacccgtgccggtgtaaggtggtggggccaacgcttgggttcgtggcgtttgttgtggcgggggtggtggaatggccggttggggctcttgt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30361056 |
caagaagcaacccgtgccggtgtaaggtggtggggccaacgatcggattcgtggcgtttgtcgtggcgggggtggtggaatggccggttggggctcttgt |
30361155 |
T |
|
| Q |
200 |
ttatatctttaagcataggaa |
220 |
Q |
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||||||||||||||||||||| |
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| T |
30361156 |
ttatatctttaagcataggaa |
30361176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 30356443 - 30356575
Alignment:
| Q |
84 |
tgcgtgcagtgtggcacaagaagcaacccgtgccggtgtaaggtggtggggccaacgcttgggttcgtggcgtttgttgtggcgggggtggtggaatggc |
183 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| | ||| | ||||||||| |||| |
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| T |
30356443 |
tgcgtgcagtgtggcacaagaagcaacccttgccggtgtaaggtggtgggaccaacgctcgggtttgtggcgtttgtcgcggcagcggtggtggagtggc |
30356542 |
T |
|
| Q |
184 |
cggttggggctcttgtttatatctttaagcata |
216 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
30356543 |
cggttggggcccttgtttatatctttaagcata |
30356575 |
T |
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