View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4095_high_9 (Length: 349)
Name: NF4095_high_9
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 36210326 - 36209994
Alignment:
| Q |
1 |
tcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210326 |
tcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaat |
36210227 |
T |
|
| Q |
101 |
gataagacgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagctgatcttctttttgctaagatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36210226 |
gataagacgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagctgatcttctttgtgctaagatga |
36210127 |
T |
|
| Q |
201 |
aagagctgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210126 |
aagagctgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaa |
36210027 |
T |
|
| Q |
301 |
gatattgctgacatctacaagtttggaggtttt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36210026 |
gatattgctgacatctacaagtttggaggtttt |
36209994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 36213649 - 36213336
Alignment:
| Q |
20 |
gtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaatgataagacgtatgtagccg |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
36213649 |
gtcacagcaactgtgacaaagaagccagacattacaatgattcaaacacaaattggtgatgcaataggtctcaattttaatgataagatgaatgtagccg |
36213550 |
T |
|
| Q |
120 |
tatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagctgatcttctttttgctaagatgaaagagctgcaaacagtcct |
219 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||| | ||| |||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
36213549 |
aatcaacttgttgcatgtgttttggtaatagtaaaacagtgacaactgcagaaagagctcatcttatttgtgctaagatgaaagagctgcaaacagtcct |
36213450 |
T |
|
| Q |
220 |
gattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaagatattgctgacatctaca |
319 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
36213449 |
gattgtaatgtatgatcttcatgggagactcgatttaggtgagattggtgtcccctttggtgaagatcataatggttgcaagatattactcacatctaca |
36213350 |
T |
|
| Q |
320 |
agtttggaggtttt |
333 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
36213349 |
agtgtggaggtttt |
36213336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 145 - 333
Target Start/End: Complemental strand, 36188749 - 36188561
Alignment:
| Q |
145 |
taatagtaaaagaatgataactgcagaaagagctgatcttctttttgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatggt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188749 |
taatagtaaaagaatgataactgcagaaagagctgatcttctttgtgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatggt |
36188650 |
T |
|
| Q |
245 |
cgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaagatattgctgacatctacaagtttggaggtttt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36188649 |
cgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggtttt |
36188561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 36201376 - 36201050
Alignment:
| Q |
7 |
gttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaatgataag |
106 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||||||||||||| |||||||||||| | ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
36201376 |
gttccaaaagactgtcacagcaactgtgaccaagaagccagacattaataagattcaaacacagattggtgatgcaataggtctcaattttaatgatatg |
36201277 |
T |
|
| Q |
107 |
acgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagctgatcttctttttgctaagatgaaagagc |
206 |
Q |
| |
|
||| | | ||| ||||||| |||||| | |||||||||||||||||||||||| ||||||||| |||||| ||||| ||| |||||||||||| |||| |
|
|
| T |
36201276 |
acggaggcagcaaaatcaacttgttgcatgtgttttggtaatagtaaaagaatgacaactgcagatagagctcatcttatttgtgctaagatgaaggagc |
36201177 |
T |
|
| Q |
207 |
tgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaagatatt |
306 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| || | ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36201176 |
tgcaaacagtcctagttgtactgtatgatcttcatggtagatttgatttaggggagattggtgtcccctttggtgaagatcataatggttgcaaggtatt |
36201077 |
T |
|
| Q |
307 |
gctgacatctacaagtttggaggtttt |
333 |
Q |
| |
|
||| ||| ||| |||| |||||||||| |
|
|
| T |
36201076 |
gctcacacctaaaagtgtggaggtttt |
36201050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 36197201 - 36196879
Alignment:
| Q |
8 |
ttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaatgataaga |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||| |
|
|
| T |
36197201 |
ttccaaaagattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaacactaattggtgatgcaatag------attttgatgataaga |
36197108 |
T |
|
| Q |
108 |
cgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagctgatcttctttttgctaagatgaaagagct |
207 |
Q |
| |
|
|| || ||| | ||||||| |||||| | |||||||||||| ||||||||| |||||||||||||||| ||||| | | |||||||||||||||||| |
|
|
| T |
36197107 |
cggatccagctgaatcaacttgttgcatgttttttggtaatagaaaaagaatggcaactgcagaaagagctcatcttttgtgtgctaagatgaaagagct |
36197008 |
T |
|
| Q |
208 |
gcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtat---cccctttggtgaagatcataatggttgcaagata |
304 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36197007 |
gcaaacagtcctagttgtactgtatgatcttcgtgggagactcgatttaggtgagattggtatccccccctttggtgaagatcataatggttgcaagata |
36196908 |
T |
|
| Q |
305 |
ttgctgacatctacaagtttggaggtttt |
333 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
36196907 |
ttgctcacatctacaagtttggaggtttt |
36196879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 36202761 - 36202435
Alignment:
| Q |
7 |
gttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaatgataag |
106 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| ||||||| |||||||| |||| |||||| |||||||| |
|
|
| T |
36202761 |
gttcgaaaagattgtcacagcaaccgtgacgaagaagccagacattacacagattcaaacacaaattggtgatgcaatatgtctgaattttgatgataag |
36202662 |
T |
|
| Q |
107 |
acgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagctgatcttctttttgctaagatgaaagagc |
206 |
Q |
| |
|
| || |||| | |||| | |||||| | || ||||||| |||||||| | |||||||||||||||| ||| || | |||||||||||| |||| |
|
|
| T |
36202661 |
attgatctagctgaatcatcctgttgcatgtcttacggtaataacaaaagaataagaactgcagaaagagctcttctactgtgtgctaagatgaaggagc |
36202562 |
T |
|
| Q |
207 |
tgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaagatatt |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |||| ||||| | || |||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
36202561 |
tgcaaacagtcctagttgtaatgtatgatctccatggtagacttgatttaagtgaaattggtatgccctttggtgaagatcataagggttgcaagatatt |
36202462 |
T |
|
| Q |
307 |
gctgacatctacaagtttggaggtttt |
333 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
36202461 |
gctgacatctacaaatttggaggtttt |
36202435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 36208233 - 36207919
Alignment:
| Q |
7 |
gttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaatgataag |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||| | ||||| | |||||||||||| |||||| |||||||| |
|
|
| T |
36208233 |
gttccaaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctgaattttgatgataag |
36208134 |
T |
|
| Q |
107 |
acgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagctgatcttctttttgctaagatgaaagagc |
206 |
Q |
| |
|
| || || | | | || || ||||| | ||| |||||||| |||||||||| |||||||||||||||| |||||| | ||||||||| || | | |
|
|
| T |
36208133 |
atcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtgtgctaagataaagaaac |
36208034 |
T |
|
| Q |
207 |
tgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaagatatt |
306 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36208033 |
tgcaaacagtactagttgtactgtatgatcttcatggtagacttgatttaggtgagattggtatcccctttggtgaagatcataatggttgcaagatatt |
36207934 |
T |
|
| Q |
307 |
gctgacatctacaag |
321 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36207933 |
gctgacatctacaag |
36207919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 36185049 - 36184735
Alignment:
| Q |
7 |
gttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaatgataag |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||| | ||||| | |||||||||||| |||||| |||||||| |
|
|
| T |
36185049 |
gttccaaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctgaattttgatgataag |
36184950 |
T |
|
| Q |
107 |
acgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagctgatcttctttttgctaagatgaaagagc |
206 |
Q |
| |
|
| || || | | | || || ||||| | ||| |||||||| |||||||||| |||||||||||||||| |||||| | |||||||| || || | |
|
|
| T |
36184949 |
atcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtgcgctaagataaaggaac |
36184850 |
T |
|
| Q |
207 |
tgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatcccctttggtgaagatcataatggttgcaagatatt |
306 |
Q |
| |
|
|||||||||| || ||||| ||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36184849 |
tgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagattggtatcccctttggtgaagatcataatggttgcaagatatt |
36184750 |
T |
|
| Q |
307 |
gctgacatctacaag |
321 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
36184749 |
gctcacatcaacaag |
36184735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 78 - 320
Target Start/End: Complemental strand, 36199283 - 36199041
Alignment:
| Q |
78 |
atgcaataggtctcaattttaatgataagacgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagc |
177 |
Q |
| |
|
||||||||||||| |||||| |||||| ||| || |||| | ||| ||| |||||| | |||||| ||||| ||||||| ||| |||| |||||||||| |
|
|
| T |
36199283 |
atgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagagc |
36199184 |
T |
|
| Q |
178 |
tgatcttctttttgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatccccttt |
277 |
Q |
| |
|
| |||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||| ||||| | ||||||||||||||||| |
|
|
| T |
36199183 |
tcttcttctgtgtgctaagatgaaagagctgcaaacagtcctagttgtagtgtatgatctttatggtagacttgatttaagtaagattggtatccccttt |
36199084 |
T |
|
| Q |
278 |
ggtgaagatcataatggttgcaagatattgctgacatctacaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36199083 |
ggtgaagatcataatggttgcaagatattgctcacatctacaa |
36199041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 36188839 - 36188746
Alignment:
| Q |
7 |
gttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36188839 |
gttccaaaagattgtcacaacaactgtaacaaagaagccagacattacaaagattcaaacagaaattggctatgcaataggtctcaattttaat |
36188746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 36214906 - 36214838
Alignment:
| Q |
7 |
gttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattgg |
75 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36214906 |
gttccaaaagattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaacacaaattgg |
36214838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 36183632 - 36183542
Alignment:
| Q |
7 |
gttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaatttt |
97 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| |||||| ||||||||| |||||| |||| ||||||| | ||||||||||||||||||| |
|
|
| T |
36183632 |
gttccaaaagatcgtcttagcaactgtgacatagaagcttgacattacatagattcgaacacaaattggtattgcaataggtctcaatttt |
36183542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 36199337 - 36199303
Alignment:
| Q |
7 |
gttccaaaagattgtcacaacaactgtgacaaaga |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
36199337 |
gttccaaaagattgtcacaacaactgtgacaaaga |
36199303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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