View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_1 (Length: 601)
Name: NF4095_low_1
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 202 - 583
Target Start/End: Complemental strand, 6111938 - 6111557
Alignment:
| Q |
202 |
ttaataacaggtcggatttggtgtttggatcttcggcagcattgcacacggtgcaacacctgcacagacattggatcatggttnnnnnnnttatgttttt |
301 |
Q |
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| T |
6111938 |
ttaataacaggtcggatttggtgtttggatcttcggcagcattgcacacggtgcaacacctgcacagacattggatcgtggttaaaaaaattatgttttt |
6111839 |
T |
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| Q |
302 |
gatctaacaaccctgcaaccgttacaccgtatgaagcgctgcaggggatccaaattttgaggttcttcgttgttcacaaactagattgtacatagtgata |
401 |
Q |
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| T |
6111838 |
gatctaacaaccctgcaaccgttacaccgtatgaagcgctgcaggggatccaagttttgaggttcttcgttgttcacaaactagattgtacatagtgata |
6111739 |
T |
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| Q |
402 |
gtactctgtcattcgccaggtggatgaattgttgctttggtctttgggtgttgttactatatcttttgcagactaaatcaatggaactgaataattctaa |
501 |
Q |
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| T |
6111738 |
gtactctgtcattcgccaggtggatgaattgttgctttggtctttgggtgttgttactatatcttttgcagactaaatcaatggaactgaataattctaa |
6111639 |
T |
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| Q |
502 |
ttgtaattccctttgttcctttgatggcaaacagatatccagaactaagtctttacggcatctgaatgttggtggtacattt |
583 |
Q |
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| T |
6111638 |
ttttaattccctttgttcctttgatggcaaacagatatccagaactaagtctttacggcatctgaatgttggtggtacattt |
6111557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 6112149 - 6111960
Alignment:
| Q |
14 |
cacagatgaaggagttgttaaactggtatgtcatcatcactgtattgtttctaaaacttggatgcctcgggttttggagattatgtcctgtttttaattt |
113 |
Q |
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| T |
6112149 |
cacagatgaaggagttgttaaactggtatgtcatcatcactgtattgtttctaaaacttggatgcctcgggttttggagattatgtcctgtttttaattt |
6112050 |
T |
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| Q |
114 |
tccaaattttggttttctgcaaaataagatgaattttattttaaaggaggatctggtgtttggatctcttgtagcgttccacacggtgtt |
203 |
Q |
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| T |
6112049 |
tccaaattttggttttctgcaaaataagatgaattttattttaaaggaggatctggtgtttggatctcttgtagcgttccacacggtgtt |
6111960 |
T |
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