View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4095_low_11 (Length: 327)

Name: NF4095_low_11

Description: NF4095

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4095_low_11

[»] chr3 (3 HSPs)

[»] chr7 (2 HSPs)

Alignment Details

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 3)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 133; E-Value: 4e-69

Query Start/End: Original strand, 187 - 327

Target Start/End: Complemental strand, 30733786 - 30733646

Alignment:

Q	187	ccttttatatatagctacctgcagtacggtatgtatataccggaggtttaaaacagaaatctgaaaactgtgcatccgatagatacactccggaggcacc	286	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30733786	ccttttatatatagctacctgcagtacggtatgtatatactggaggtttaaaacagaaatctgaaaactgtgcatccggtagatacactccggaggcacc	30733687	T

Q	287	aatttttaaataccaaggttaattttgtatttttagggggc	327	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30733686	aatttttaaataccaaggttaattttgtatttttagggggc	30733646	T

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Target: chr3; HSP #2

Raw Score: 113; E-Value: 3e-57

Query Start/End: Original strand, 11 - 135

Target Start/End: Complemental strand, 30733963 - 30733839

Alignment:

Q	11	aagaatatacacataatcaatcaattattactgcttttgattaatttgattcctcttctgatataatactaaattcccacaacacataatattagagctc	110	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30733963	aagaaaatacacataatcaatcaattattactgcttttgattaatttgattcctcttctgatataatattaagttcccacaacacataatattagagctc	30733864	T

Q	111	caatacaaggactaatcagagacat	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30733863	caatacaaggactaatcagagacat	30733839	T

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Target: chr3; HSP #3

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 207 - 253

Target Start/End: Complemental strand, 49243308 - 49243262

Alignment:

Q	207	gcagtacggtatgtatataccggaggtttaaaacagaaatctgaaaa	253	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|
T	49243308	gcagtacggtatatatataccggaagtttaaaaaagaaatttgaaaa	49243262	T

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Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 121; E-Value: 6e-62

Query Start/End: Original strand, 187 - 327

Target Start/End: Original strand, 22377239 - 22377379

Alignment:

Q	187	ccttttatatatagctacctgcagtacggtatgtatataccggaggtttaaaacagaaatctgaaaactgtgcatccgatagatacactccggaggcacc	286	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	22377239	ccttttatatatagctacctgcagtacggtatgtatatacaggaggtttaaaacagaaatctaaaaactgtgcatccggtagatacacttcggaggcacc	22377338	T

Q	287	aatttttaaataccaaggttaattttgtatttttagggggc	327	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22377339	aatttttaaataccaaagttaattttgtatttttagggggc	22377379	T

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Target: chr7; HSP #2

Raw Score: 117; E-Value: 1e-59

Query Start/End: Original strand, 11 - 135

Target Start/End: Original strand, 22377062 - 22377186

Alignment:

Q	11	aagaatatacacataatcaatcaattattactgcttttgattaatttgattcctcttctgatataatactaaattcccacaacacataatattagagctc	110	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22377062	aagaaaatacacataatcaatcaattattactgcttttgattaatttgattcctcttctgatataatactaagttcccacaacacataatattagagctc	22377161	T

Q	111	caatacaaggactaatcagagacat	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22377162	caatacaaggactaatcagagacat	22377186	T

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