View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_12 (Length: 322)
Name: NF4095_low_12
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 43699750 - 43699448
Alignment:
| Q |
17 |
caggtcctgcaatggccgttcgaaacgaggcaaacaatagcatattccttcggtgctccattcaaggattccaagacaccttgtttgctgtttccggaag |
116 |
Q |
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| T |
43699750 |
caggtcctgcaatggccgttcgaaacgaggcaaacaatagtatattccttcggtgctccattcaaggattccaagacaccttatttgctgtttccggaag |
43699651 |
T |
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| Q |
117 |
acaattctacaaaaactgtgaaatctatggtatcgtcgacttcatcttcggcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcgg |
216 |
Q |
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| T |
43699650 |
acaattctacaaaaactgtgaaatatatggtaccgtcgacttcatcttcggcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcga |
43699551 |
T |
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| Q |
217 |
cagtttgtggtattcaccgctcagtcacgtggaaatccatctgaaaaaacaggtttcacattccaacattgtaatttcaccatgtcacctgaagatgaag |
316 |
Q |
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| T |
43699550 |
cagttcgtggtattcaccgcacaatcacgtggaaatccatctgaaaaaacaggtttcacattccaacattgtaatttcaccatgtcacctgaagatgaag |
43699451 |
T |
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| Q |
317 |
gca |
319 |
Q |
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| T |
43699450 |
gca |
43699448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 23 - 314
Target Start/End: Complemental strand, 45514546 - 45514255
Alignment:
| Q |
23 |
ctgcaatggccgttcgaaacgaggcaaacaatagcatattccttcggtgctccattcaaggattccaagacaccttgtttgctgtttccggaagacaatt |
122 |
Q |
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| T |
45514546 |
ctgcagtggccgttcggaacgaagcaaacaacagcatattcttccaatgctccatccaaggattccaagacaccttgtgggctgtttccggtagacaatt |
45514447 |
T |
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| Q |
123 |
ctacaaaaactgtgaaatctatggtatcgtcgacttcatcttcggcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcggcagttt |
222 |
Q |
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| T |
45514446 |
ctacaaaaactgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacagttt |
45514347 |
T |
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| Q |
223 |
gtggtattcaccgctcagtcacgtggaaatccatctgaaaaaacaggtttcacattccaacattgtaatttcaccatgtcacctgaagatga |
314 |
Q |
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||| ||||||||| |||||||||| || ||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |
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| T |
45514346 |
gtgacattcaccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatga |
45514255 |
T |
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