View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4095_low_13 (Length: 309)
Name: NF4095_low_13
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 43699434 - 43699126
Alignment:
| Q |
1 |
gcgtggaacattgggtcgtccttggagggcatattccacagtggctatattgcaatgtttcatagattcctttgtggatactagaggttgggaacagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699434 |
gcgtggaacattgggtcgtccttggagggcatattccacagtggctatattgcaatgtttcatagattcctttgtggatactagaggttgggaacagatg |
43699335 |
T |
|
| Q |
101 |
gagggacaacccaatgataaggttacttatgtggagtttgagaatgttggacctggatctaacactgatggtagagtgaattggcctggtgttacagtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43699334 |
gagggacaacccaatgataaggttacttatgtggagtttgagaatgttggacctggatctaacactgatggtagagtgaattggcctggtgttaaagtta |
43699235 |
T |
|
| Q |
201 |
ttcgcaactcggaccaagcactcccgttcactgcttcatatctcttggatgctgactcttggattccttctaaggatgttccctatgatagtggattata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43699234 |
ttcgcaactcggaccaagcactcccgttcactgcttcatatctcttggatgctgactcttggattccttctaaggatgttccctatgatagtggactata |
43699135 |
T |
|
| Q |
301 |
gtatataat |
309 |
Q |
| |
|
|| |||||| |
|
|
| T |
43699134 |
gtctataat |
43699126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 45514230 - 45513942
Alignment:
| Q |
7 |
aacattgggtcgtccttggagggcatattccacagtggctatattgcaatgtttcatagattcctttgtggatactagaggttgggaacagatggaggga |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | || ||| | |||||||||||| |||| || |
|
|
| T |
45514230 |
aacattaggtcgtccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatccaagaggttgggaagggatgtcaggt |
45514131 |
T |
|
| Q |
107 |
caacccaatgataaggttacttatgtggagtttgagaatgttggacctggatctaacactgatggtagagtgaattggcctggtgttacagttattcgca |
206 |
Q |
| |
|
| ||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
45514130 |
ctggccactgataaagttacttatgttgagtttgagaatgttggacctggatcaaacactgatggtagagtggattggccaggtgttacagttcttcgca |
45514031 |
T |
|
| Q |
207 |
actcggaccaagcactcccgttcactgcttcatatctcttggatgctgactcttggattccttctaaggatgttccctatgatagtgga |
295 |
Q |
| |
|
|| | || |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||| |||||||| |
|
|
| T |
45514030 |
acccaaacaaagcactccctttcactgcttcctatctcttggatgctgactcttggattccctctacaggtgttccctatcatagtgga |
45513942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University