View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4095_low_14 (Length: 294)

Name: NF4095_low_14
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4095_low_14
NF4095_low_14
[»] chr5 (12 HSPs)
chr5 (5-275)||(41286365-41286635)
chr5 (1-159)||(41316352-41316510)
chr5 (1-169)||(31188371-31188539)
chr5 (3-155)||(41328321-41328473)
chr5 (1-155)||(41332332-41332486)
chr5 (1-158)||(41310612-41310769)
chr5 (1-158)||(41324421-41324578)
chr5 (1-105)||(31225274-31225378)
chr5 (44-152)||(41337304-41337412)
chr5 (1-93)||(31178402-31178494)
chr5 (1-158)||(41366512-41366666)
chr5 (174-241)||(4209918-4209986)
[»] chr4 (1 HSPs)
chr4 (46-158)||(17249070-17249182)
[»] chr3 (2 HSPs)
chr3 (174-245)||(31311326-31311398)
chr3 (179-239)||(55378742-55378803)
[»] chr6 (3 HSPs)
chr6 (223-274)||(2401881-2401932)
chr6 (176-241)||(2401804-2401870)
chr6 (178-241)||(17545311-17545375)
[»] chr2 (1 HSPs)
chr2 (176-241)||(27277547-27277613)
[»] chr8 (1 HSPs)
chr8 (175-247)||(35213373-35213446)
[»] chr7 (1 HSPs)
chr7 (181-241)||(42424577-42424638)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 41286365 - 41286635
Alignment:
Q  5 agacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  41286365 agacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacaggaaagtgagcactca 41286464  T
Q  105 caacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattatgtttttgatcccct 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41286465 taacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattatgcttttgatcccct 41286564  T
Q  205 aaatatacatactattgattttagtccccctaaaattctccatctatggaattggtccctgctattaactc 275  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  41286565 aaatatacatactattgattttagtcctcctaaaattctccatctatggaattggtccctgctgttaactc 41286635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 41316352 - 41316510
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||||||||| || ||||| ||||| | ||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||    
T  41316352 tgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatca 41316451  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaac 159  Q
    |||||||||||| || |||||||| ||| ||||| || ||||||||||||||| |||||    
T  41316452 ctcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaac 41316510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 31188539 - 31188371
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||| ||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||| ||    
T  31188539 tgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatgatca 31188440  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgtt 169  Q
    ||||||  |||| || |||||| | ||| | |||||| |||| | |||| ||||||||| || ||||||    
T  31188439 ctcacataatccattaactgataacaatatgaaagcaatcattctggttcgtctacaaccaaacatgtt 31188371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 41328321 - 41328473
Alignment:
Q  3 caagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcact 102  Q
    ||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||||    
T  41328321 caagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcact 41328420  T
Q  103 cacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 155  Q
    || ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41328421 cagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 41332332 - 41332486
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | |  |    
T  41332332 tgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatta 41332431  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 155  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41332432 ctcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41310612 - 41310769
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||||||||| || ||||| ||||| | || || |||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||| | | ||    
T  41310612 tgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatgttcttctcaagattaaacaggaaaattatca 41310711  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 158  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||| |||||||||    
T  41310712 ctcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41324421 - 41324578
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    |||||||||| || || ||||| ||||| | ||||| |||||| ||||| || ||| |||||||  ||||||||||||||||||||||||||| | | ||    
T  41324421 tgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatca 41324520  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 158  Q
    |||||||||||| || || ||||| ||| ||||  || ||||||||||||||| ||||    
T  41324521 ctcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31225274 - 31225378
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||| ||||| |||||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||| ||||||    
T  31225274 tgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaaaatgagca 31225373  T
Q  101 ctcac 105  Q
    |||||    
T  31225374 ctcac 31225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 41337304 - 41337412
Alignment:
Q  44 aagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatc 143  Q
    |||||| |||||||| |||||| |||||||||||||| ||||||| |||| ||  ||||||||||| |||||||||||||| ||| ||||| |||||||     
T  41337304 aagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcatt 41337403  T
Q  144 caggttagt 152  Q
    |||||||||    
T  41337404 caggttagt 41337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31178494 - 31178402
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaa 93  Q
    ||||||| ||| | |||||||||||||  | ||||| |||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||    
T  31178494 tgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaaa 31178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41366512 - 41366666
Alignment:
Q  1 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 100  Q
    ||||||| ||||| |||||||| ||||| ||||||| | |||  || ||  |||| ||||||||  |||||||||||||||||||||  | || |   ||    
T  41366512 tgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaaat---ca 41366608  T
Q  101 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 158  Q
    |||||||||||||||||| || || ||| ||||| | |||||||||||||||| ||||    
T  41366609 ctcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 4209918 - 4209986
Alignment:
Q  174 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 241  Q
    |||| |||||||| ||| |||||||||||  |||||||||| ||| || ||||||||||| ||||||||    
T  4209918 atttaagggttaaatatatttttgatccctataaatatacaaactttttattttagtccctctaaaatt 4209986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 17249182 - 17249070
Alignment:
Q  46 gcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatcca 145  Q
    |||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||  || ||||| || | ||||||||||| ||| ||||| || |||||||    
T  17249182 gcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatcca 17249083  T
Q  146 ggttagtctacaa 158  Q
    |||||||||||||    
T  17249082 ggttagtctacaa 17249070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 31311398 - 31311326
Alignment:
Q  174 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctcc 245  Q
    ||||||||||||| |||||||||| ||||  |||||||||| ||| || ||||||||||| ||||||||||||    
T  31311398 attttagggttaaatatgtttttggtccctataaatatacaaacttttcattttagtccctctaaaattctcc 31311326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 55378742 - 55378803
Alignment:
Q  179 agggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaa 239  Q
    |||||||| |||||||||||||||  |||||||||| ||| || ||||||||||| ||||||    
T  55378742 agggttaaatatgtttttgatccctataaatatacaaacttttcattttagtccctctaaaa 55378803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 2401881 - 2401932
Alignment:
Q  223 ttttagtccccctaaaattctccatctatggaattggtccctgctattaact 274  Q
    |||||||||| |||||||||| ||| |||| |||||||||||||| ||||||    
T  2401881 ttttagtccctctaaaattcttcatttatgaaattggtccctgctgttaact 2401932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 2401804 - 2401870
Alignment:
Q  176 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 241  Q
    |||||||||||||||||||||  ||||| |||||||||  | | |||||||||| ||||||||||||    
T  2401804 tttagggttaattatgttttttgtccccttaaatataccaattgttgattttagcccccctaaaatt 2401870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 17545375 - 17545311
Alignment:
Q  178 tagggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaatt 241  Q
    ||||||||| |||||||||||||||  |||||||||| ||| ||  |||||||||| ||||||||    
T  17545375 tagggttaaatatgtttttgatccctataaatatacaaactttttgttttagtccctctaaaatt 17545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 27277547 - 27277613
Alignment:
Q  176 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 241  Q
    ||||||||||| |||||||||| ||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  27277547 tttagggttaaatatgtttttggtccccataaatatacaaacttttcgttttagtccctctaaaatt 27277613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 35213373 - 35213446
Alignment:
Q  175 ttttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctccat 247  Q
    |||||||||||| |||||||||| |||   |||||||||| ||| || ||||||||||| |||||||| |||||    
T  35213373 ttttagggttaaatatgtttttggtccttataaatatacaaactttttattttagtccctctaaaattttccat 35213446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 42424638 - 42424577
Alignment:
Q  181 ggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 241  Q
    |||||||||| |||||||||||| ||||||||   ||| ||||||||||||| |||||||||    
T  42424638 ggttaattatatttttgatccccctaaatatatcaactgttgattttagtcctcctaaaatt 42424577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University