View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_15 (Length: 288)
Name: NF4095_low_15
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 50981863 - 50981722
Alignment:
| Q |
16 |
caataacactataattatcatcatttttggaggacgtaggttttcctagggctcgcatgatcaattagttaatttataaggaaaatcatctcgcgttttc |
115 |
Q |
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| T |
50981863 |
caataacactataattatcgtcatttttggaggacgtaggttttcctagggttcgcatgatcaattagttaatttataaggaaaatcatctcgcgttttc |
50981764 |
T |
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| Q |
116 |
acaaattgtatgcacccatctcctttaatttcacttattttc |
157 |
Q |
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| T |
50981763 |
acaaattgtatgcacccatctcctttaatttcacttattttc |
50981722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 51084997 - 51084856
Alignment:
| Q |
16 |
caataacactataattatcatcatttttggaggacgtaggttttcctagggctcgcatgatcaattagttaatttataaggaaaatcatctcgcgttttc |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51084997 |
caataacactataattatcgtcatttttggaggacgtaggttttcctagggttcgcatgatcaattagttaatttataaggaaaatcatctcgcgttttc |
51084898 |
T |
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| Q |
116 |
acaaattgtatgcacccatctcctttaatttcacttattttc |
157 |
Q |
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| T |
51084897 |
acaaattgtatgcacccatctcctttaatttcacttattttc |
51084856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 50981655 - 50981603
Alignment:
| Q |
223 |
cccatctccttgatatatattggcacatctcttttcctttctggctttggcct |
275 |
Q |
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| T |
50981655 |
cccatctcctttatatatattggcacatctcttttcctttctggctttggcct |
50981603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 51084789 - 51084737
Alignment:
| Q |
223 |
cccatctccttgatatatattggcacatctcttttcctttctggctttggcct |
275 |
Q |
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| T |
51084789 |
cccatctcctttatatatattggcacatctcttttcctttctggctttggcct |
51084737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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