View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_17 (Length: 269)
Name: NF4095_low_17
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 1861438 - 1861653
Alignment:
| Q |
41 |
gagcaataaaaacacttcttctctcttcccaaattctaccttcttccgaaacataaacacacgtgtgttatgcatgaatatgcaaatagtaggcaatgaa |
140 |
Q |
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| T |
1861438 |
gagcaataaaaacacttcttctctcttcccatattctaccttcttccgaaacataaacacacgtgtgttatgcatgaatatgcaaatagtaggcaatgaa |
1861537 |
T |
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| Q |
141 |
ggagaagagagtggcaccaaggattgaaccaaaagaaacagcatcactactgtttggtcctggggcaggactttcaacatggttttgatgatattgatga |
240 |
Q |
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| T |
1861538 |
ggagaagagagtggcaccaaggattgaaccaaaagaaacagcatcactactgtttggtcctggggcaggactttcaacatggttttgatgatattgatga |
1861637 |
T |
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| Q |
241 |
tcaagtggtatatctc |
256 |
Q |
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| T |
1861638 |
tcaagtggaatatctc |
1861653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 1865483 - 1865595
Alignment:
| Q |
79 |
ccttcttccgaaacataaacacacgtgtgttatgcatgaatatgcaaatagtaggcaatgaaggagaagagagtggcaccaaggattgaaccaaaagaaa |
178 |
Q |
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| T |
1865483 |
ccttcttcccaaacataaatacatgtgaattatgcatgattgcacaaatagtaggcaacaaaggagaagagagagacaccaaggattgaaccaggagaag |
1865582 |
T |
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| Q |
179 |
cagcatcactact |
191 |
Q |
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| T |
1865583 |
cagcatcactact |
1865595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 52501237 - 52501149
Alignment:
| Q |
103 |
gtgtgttatgcatgaatatgcaaatagtaggcaatgaaggagaagagagtggcaccaaggattgaaccaaaagaaacagcatcactact |
191 |
Q |
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| T |
52501237 |
gtgttttatgcatgaataaataaatagtatgcaacaaaggagaagagagatgcaccaaggattgaaccaagataaacagcatcactact |
52501149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 13503668 - 13503743
Alignment:
| Q |
113 |
catgaatatgcaaatagtaggcaatgaaggagaagagagtggcaccaaggattgaaccaaaagaaacagcatcact |
188 |
Q |
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| T |
13503668 |
catgaaaatgcaagtagtaggcaacaaaggagaagatagaggcaccaaagattgaaccaagagaagcagcatcact |
13503743 |
T |
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