View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_18 (Length: 269)
Name: NF4095_low_18
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 4260882 - 4260679
Alignment:
| Q |
20 |
tccatcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattc |
119 |
Q |
| |
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||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
4260882 |
tccattttctccaaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcgttggttctaaacgattc |
4260783 |
T |
|
| Q |
120 |
ctgcaatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260782 |
ctgcaatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttg |
4260683 |
T |
|
| Q |
220 |
acaa |
223 |
Q |
| |
|
|||| |
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|
| T |
4260682 |
acaa |
4260679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 4255591 - 4255794
Alignment:
| Q |
20 |
tccatcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattc |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||||| |||||| |||| | ||||||||||| |
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|
| T |
4255591 |
tccatcttcccccaataactcacctgttttaacaatttcaagtcatgttccaatacaatttccaaaatatgttgcaggagtaggtgctcctaaacgattc |
4255690 |
T |
|
| Q |
120 |
ctgcaatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttg |
219 |
Q |
| |
|
|||||||||||||| |||||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4255691 |
ctgcaatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttg |
4255790 |
T |
|
| Q |
220 |
acaa |
223 |
Q |
| |
|
|||| |
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|
| T |
4255791 |
acaa |
4255794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 4289295 - 4289497
Alignment:
| Q |
20 |
tccatcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattc |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||| |
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| T |
4289295 |
tccatcttcccccaataactcatttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgatta |
4289394 |
T |
|
| Q |
120 |
ctgcaatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttg |
219 |
Q |
| |
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| ||||| ||||||||| |||||| | |||||||||||||||||| |||||||||| ||| |||||| |||||||||| |||||||| ||||| |||| |
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| T |
4289395 |
cgacaatcaatattcaaaaccatcatagcatttttgttctcaatttcttctgctttcactctgcatacccatgcataagctatagatacaacaaaagttg |
4289494 |
T |
|
| Q |
220 |
aca |
222 |
Q |
| |
|
||| |
|
|
| T |
4289495 |
aca |
4289497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 4297890 - 4298061
Alignment:
| Q |
20 |
tccatcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattc |
119 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | || | ||||||||| || |
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| T |
4297890 |
tccattttctccaaataactcacttgttttaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggaattggctgatctaaacgagtc |
4297989 |
T |
|
| Q |
120 |
ctgcaatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaat |
191 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4297990 |
cgacaatcgatattcaaacccatcacaacatttttgttctcaattttctcggctttcattctacataccaat |
4298061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 4284597 - 4284799
Alignment:
| Q |
21 |
ccatcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattcc |
120 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
4284597 |
ccatctttccccaataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggttctaaacaattcc |
4284696 |
T |
|
| Q |
121 |
tgcaatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttga |
220 |
Q |
| |
|
||||| ||||||||| |||||| | |||||||||||||||||| | ||||||||||| ||||| | |||||||| || ||||| ||||| ||||| |
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|
| T |
4284697 |
gacaatcaatattcaaagccatcagagcatttttgttctcaatttctttagctttcattctgtatacccaggcataagctatggatacaacaaaagttga |
4284796 |
T |
|
| Q |
221 |
caa |
223 |
Q |
| |
|
||| |
|
|
| T |
4284797 |
caa |
4284799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 4266428 - 4266226
Alignment:
| Q |
20 |
tccatcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattc |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||| | ||||||||||| |
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|
| T |
4266428 |
tccatcttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgatta |
4266329 |
T |
|
| Q |
120 |
ctgcaatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttg |
219 |
Q |
| |
|
| ||||| ||||||||| |||||| | |||||||||||||||||| |||| ||||| ||| |||||| |||||||||| |||||||| ||||| |||| |
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|
| T |
4266328 |
cgacaatcaatattcaaaaccatcatagcatttttgttctcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttg |
4266229 |
T |
|
| Q |
220 |
aca |
222 |
Q |
| |
|
||| |
|
|
| T |
4266228 |
aca |
4266226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 4257855 - 4257989
Alignment:
| Q |
20 |
tccatcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacga-tt |
118 |
Q |
| |
|
||||| ||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || |
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|
| T |
4257855 |
tccattttctccaaataactcatttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcggttgttctaaacgattt |
4257954 |
T |
|
| Q |
119 |
cctgcaatcgatattcaaacccatcacaacatttt |
153 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4257955 |
cctgcaatcgatagtcaaacccatcacaacatttt |
4257989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 4258319 - 4258388
Alignment:
| Q |
152 |
tttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgac |
221 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4258319 |
tttgttctcaagtttttctgctttcagtctacataccaatgcataagcaatagataccacaaatgttgac |
4258388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 4259553 - 4259465
Alignment:
| Q |
131 |
attcaaacccatcacaacatttttgttctcaattttctctgctttcattc-------tacataccaatgcataagcaatagataccaca |
212 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4259553 |
attcaaacccgacacaacttttttgttctcaattttctctgctttcattctaaatagtaaataccaatgcataagcaatagataccaca |
4259465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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