View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_19 (Length: 262)
Name: NF4095_low_19
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 10194297 - 10194538
Alignment:
| Q |
19 |
tgatcataaatcgcaaattataattgacaagaa---------aaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcat |
109 |
Q |
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| T |
10194297 |
tgatcataaatcgcaaattataattgacaagaaaaaccagaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcat |
10194396 |
T |
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| Q |
110 |
atttatctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaaca |
209 |
Q |
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| T |
10194397 |
atttatctttaaatgcgttacttattcaaaatagaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaaca |
10194496 |
T |
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| Q |
210 |
ccgtttaaatccactaaagctaatcagcaaaatcacaggttc |
251 |
Q |
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| T |
10194497 |
ccgtttaaatccactaaagctaatcagcaaaatcacaggttc |
10194538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 19459304 - 19459169
Alignment:
| Q |
116 |
ctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgttt |
215 |
Q |
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|||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
19459304 |
ctttgaatgcgttacttgttcaaaatcaaactctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaatacggttt |
19459205 |
T |
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| Q |
216 |
aaatccactaaagctaatcagcaaaatcacaggttc |
251 |
Q |
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| T |
19459204 |
aaatccactgaagctaatcagcaaaatcacaggttc |
19459169 |
T |
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