View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_21 (Length: 253)
Name: NF4095_low_21
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 74 - 251
Target Start/End: Original strand, 26496819 - 26496999
Alignment:
| Q |
74 |
atttcatttcctttttgagttatatctcctttgatatgttcattgagaaagctctcagaaaatttgtttcagtttagttattgagatatattatgttatg |
173 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26496819 |
atttcatttcctttttgagttatacctactttgatatgttcattgagaaagctctcagaaaatttgtttcagtttagttattgagatatattatgtgatg |
26496918 |
T |
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| Q |
174 |
tt---attgcttcctactttttccttttcaattcaatatttctgctattaatattcttattcattcggaccaatttgttgt |
251 |
Q |
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| T |
26496919 |
ttagaattgcttcctactgtttccttttcaattctatatttctgctattaatattcttattaattcggaccaatttgttgt |
26496999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 38015378 - 38015287
Alignment:
| Q |
74 |
atttcatttcctttttgagttatatctcctttgatatgttcattgagaaagctctcagaaaatttgtttcagtttagttattgagatatattatg |
168 |
Q |
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| T |
38015378 |
atttcatttcctttttgatttatacctacgttgctct--tcattgagaaagctctaagaaaatttgtttcagtttcgtta-tgagatatattatg |
38015287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 38016262 - 38016226
Alignment:
| Q |
18 |
aataactctcattatgattggaatttaaaattaactt |
54 |
Q |
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| T |
38016262 |
aataactctcattatgattggaatttaaaattaactt |
38016226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 4436451 - 4436496
Alignment:
| Q |
18 |
aataactctcattatgattggaatttaaaattaacttagggatgtt |
63 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4436451 |
aataactctcattatgattggaatttaaaattaacttagggttgtt |
4436496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 37718709 - 37718664
Alignment:
| Q |
18 |
aataactctcattatgattggaatttaaaattaacttagggatgtt |
63 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37718709 |
aataactctcattatgattggaatttaaaattaacttagggttgtt |
37718664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 46594387 - 46594342
Alignment:
| Q |
18 |
aataactctcattatgattggaatttaaaattaacttagggatgtt |
63 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46594387 |
aataactctcattatgattggaatttaaaattaacttagggttgtt |
46594342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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