View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_26 (Length: 245)
Name: NF4095_low_26
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 45164724 - 45164487
Alignment:
| Q |
1 |
aaacaagtctctttcgggcatttgatcaaacaggttccttgcaagattgaacttggagtttctcaagtaaccagatatcatggcattgtaggaaacggag |
100 |
Q |
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| T |
45164724 |
aaacaagtctctttcaggcatttgatcaaacaggttccttgcaagattgaacttggagtttctcaagtaaccagatatcatggcattgtaggaaacggag |
45164625 |
T |
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| Q |
101 |
cttcggcgaggcatggtgttgaagacatggagagcagagtcgcagtggccattgcgcatgtgagtagaaatggctttgttccatttaaggatgtcagggt |
200 |
Q |
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| T |
45164624 |
cttcggcgaggcatggtgttgaagacatggagagcagagtcgcagtggccattgcgcatatgagtagaaatggctttgttccatttaaggatgtcagggt |
45164525 |
T |
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| Q |
201 |
ctttcactcttggcttgttgttgttggttacactttca |
238 |
Q |
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| T |
45164524 |
ctttcactcttggcttgttgttgttggttacactttca |
45164487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 45148348 - 45148284
Alignment:
| Q |
109 |
aggcatggtgttgaagacatggagagcagagtcgcagtggccattgcgcatgtgagtagaaatgg |
173 |
Q |
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| T |
45148348 |
aggcatggagtcgaagacacgaagagctaaatggcagtggccattgcgcatgtgagtggaaatgg |
45148284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 24137555 - 24137619
Alignment:
| Q |
109 |
aggcatggtgttgaagacatggagagcagagtcgcagtggccattgcgcatgtgagtagaaatgg |
173 |
Q |
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| T |
24137555 |
aggcatggcattgaagacacgaagagccaagtcgcagtggccattgcgcatgtgaatagaaatgg |
24137619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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