View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4095_low_27 (Length: 240)

Name: NF4095_low_27
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4095_low_27
NF4095_low_27
[»] chr1 (6 HSPs)
chr1 (7-221)||(50019105-50019322)
chr1 (1-221)||(11474215-11474435)
chr1 (1-221)||(28245616-28245836)
chr1 (7-45)||(10465027-10465065)
chr1 (7-45)||(43734679-43734717)
chr1 (7-45)||(50673558-50673596)
[»] chr2 (2 HSPs)
chr2 (1-221)||(38252431-38252651)
chr2 (1-221)||(43156891-43157111)
[»] chr6 (2 HSPs)
chr6 (1-221)||(10123843-10124063)
chr6 (1-221)||(19307293-19307513)
[»] chr5 (1 HSPs)
chr5 (1-221)||(25382328-25382549)
[»] chr4 (1 HSPs)
chr4 (7-179)||(48794164-48794336)
[»] chr8 (1 HSPs)
chr8 (7-45)||(25862746-25862784)
[»] chr7 (1 HSPs)
chr7 (9-45)||(27979093-27979129)
[»] chr3 (2 HSPs)
chr3 (9-45)||(5911504-5911540)
chr3 (8-77)||(22982375-22982446)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 50019322 - 50019105
Alignment:
Q  7 tgatggagtatcttgttctacg---cctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttcaaaa 103  Q
    ||||||||||||||||||| ||   ||||||||||||||||| ||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||    
T  50019322 tgatggagtatcttgttctgcgtcgcctccaacttatgagcccccacaagcacatgaggatcaagtcaattacattgtcatgctaatggtaatttcaaaa 50019223  T
Q  104 gcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggcaatagggcggccagcctatttgaat 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  50019222 gcaaattcataaggaactattcatacatttaacaagtatcgtgattctaatttttaagttgttattaatgtaggcaatagggaggccagcctatttgaat 50019123  T
Q  204 ggaatgaatgcatagggg 221  Q
    ||||||||||||||||||    
T  50019122 ggaatgaatgcatagggg 50019105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11474215 - 11474435
Alignment:
Q  1 ttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttca 100  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |||||||||||||||||||||    
T  11474215 ttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttca 11474314  T
Q  101 aaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggcaatagggcggccagcctatttg 200  Q
    ||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||| ||||||||    
T  11474315 aaaacaaattcataaagaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtaggaaataggggggccaacctatttg 11474414  T
Q  201 aatggaatgaatgcatagggg 221  Q
    |||||||||||||||||||||    
T  11474415 aatggaatgaatgcatagggg 11474435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28245836 - 28245616
Alignment:
Q  1 ttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttca 100  Q
    ||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||| | |||||  |||||||||||||||  ||||||||||||||||||||    
T  28245836 ttaggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttca 28245737  T
Q  101 aaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggcaatagggcggccagcctatttg 200  Q
    ||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||| | ||||| ||||||||    
T  28245736 aaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtaggaaatagaggggccaacctatttg 28245637  T
Q  201 aatggaatgaatgcatagggg 221  Q
    |||||||||||||||||||||    
T  28245636 aatggaatgaatgcatagggg 28245616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 10465065 - 10465027
Alignment:
Q  7 tgatggagtatcttgttctacgcctccaacttatgagcc 45  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  10465065 tgatggagtatcttgttccgcgcctccaacttatgagcc 10465027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 43734717 - 43734679
Alignment:
Q  7 tgatggagtatcttgttctacgcctccaacttatgagcc 45  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  43734717 tgatggagtatcttgttccgcgcctccaacttatgagcc 43734679  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 50673596 - 50673558
Alignment:
Q  7 tgatggagtatcttgttctacgcctccaacttatgagcc 45  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  50673596 tgatggagtatcttgttccgcgcctccaacttatgagcc 50673558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38252651 - 38252431
Alignment:
Q  1 ttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttca 100  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |||||||||||||||||||||    
T  38252651 ttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttca 38252552  T
Q  101 aaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggcaatagggcggccagcctatttg 200  Q
    ||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||| ||||||||    
T  38252551 aaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtaggaaataggggggccaacctatttg 38252452  T
Q  201 aatggaatgaatgcatagggg 221  Q
    |||||||||||||||||||||    
T  38252451 aatggaatgaatgcatagggg 38252431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43156891 - 43157111
Alignment:
Q  1 ttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttca 100  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |||||||||||||||||||||    
T  43156891 ttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttca 43156990  T
Q  101 aaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggcaatagggcggccagcctatttg 200  Q
    ||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||| ||||||||    
T  43156991 aaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtaggaaataggggggccaacctatttg 43157090  T
Q  201 aatggaatgaatgcatagggg 221  Q
    |||||||||||||||||||||    
T  43157091 aatggaatgaatgcatagggg 43157111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10124063 - 10123843
Alignment:
Q  1 ttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttca 100  Q
    ||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |||||||||||||||||||||    
T  10124063 ttaggttgatggagtatcttgttatgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttca 10123964  T
Q  101 aaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggcaatagggcggccagcctatttg 200  Q
    ||| ||||||||||   ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||| ||||||||    
T  10123963 aaaacaaattcatattgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtaggaaataggggggccaacctatttg 10123864  T
Q  201 aatggaatgaatgcatagggg 221  Q
    |||||||||||||||||||||    
T  10123863 aatggaatgaatgcatagggg 10123843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19307513 - 19307293
Alignment:
Q  1 ttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttca 100  Q
    ||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |||||||||||||||||||||    
T  19307513 ttaggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttca 19307414  T
Q  101 aaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggcaatagggcggccagcctatttg 200  Q
    ||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||| | ||||| ||||||||    
T  19307413 aaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtaggaaatagaggggccaacctatttg 19307314  T
Q  201 aatggaatgaatgcatagggg 221  Q
    |||||||||||| ||||||||    
T  19307313 aatggaatgaattcatagggg 19307293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25382328 - 25382549
Alignment:
Q  1 ttagggtgatggagtatcttgttctacgcctccaacttatgagccacc-acaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttc 99  Q
    ||||| ||||||||||||||||||| ||||| |||||||||| || || ||||| | || ||  ||||||||||||||| ||||||||||||||||||||    
T  25382328 ttaggttgatggagtatcttgttctgcgcctacaacttatgatccccccacaagcacataagtctcaagtcaattacacagccatgctaatggtaatttc 25382427  T
Q  100 aaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggcaatagggcggccagcctattt 199  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||| |||||||    
T  25382428 aaaaacaaattcataaggaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtaggaaataggggggccaacctattt 25382527  T
Q  200 gaatggaatgaatgcatagggg 221  Q
    ||||||||||||||||||||||    
T  25382528 gaatggaatgaatgcatagggg 25382549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 48794164 - 48794336
Alignment:
Q  7 tgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttcaaaagca 106  Q
    ||||||||||||||||||| | ||||||||||||| ||| ||||||| | ||||||||||| |||||||||| |||||||| ||||||||||||||| ||    
T  48794164 tgatggagtatcttgttctgcacctccaacttatgcgcccccacaagcacatgaggatcaattcaattacacagccatgctgatggtaatttcaaaaaca 48794263  T
Q  107 aattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggca 179  Q
    |||||||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  48794264 aattcataaggaactatacatacatttaacatgtatcgtgatgctaatttttaagttgttattaatgtaggca 48794336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 25862746 - 25862784
Alignment:
Q  7 tgatggagtatcttgttctacgcctccaacttatgagcc 45  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  25862746 tgatggagtatcttgttccgcgcctccaacttatgagcc 25862784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 27979093 - 27979129
Alignment:
Q  9 atggagtatcttgttctacgcctccaacttatgagcc 45  Q
    ||||||||||||||||  |||||||||||||||||||    
T  27979093 atggagtatcttgttccgcgcctccaacttatgagcc 27979129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 5911504 - 5911540
Alignment:
Q  9 atggagtatcttgttctacgcctccaacttatgagcc 45  Q
    ||||||||||||||||  |||||||||||||||||||    
T  5911504 atggagtatcttgttccgcgcctccaacttatgagcc 5911540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 22982375 - 22982446
Alignment:
Q  8 gatggagtatcttgttctacgcctccaact--tatgagccaccacaagtatatgaggatcaagtcaattaca 77  Q
    ||||||||||||||||| || |||||||||  |||||| | ||| ||||| ||||||| ||||||| |||||    
T  22982375 gatggagtatcttgttccacacctccaacttatatgaggccccataagtacatgaggagcaagtcagttaca 22982446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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