View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_33 (Length: 226)
Name: NF4095_low_33
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_33 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 56565 - 56781
Alignment:
| Q |
1 |
tcatcactcaaatcgaaaactggataccaacaagcagaaaaacatcagaaaaaggaattttttcatataaattgagccgaatacaacaagcagtgaagac |
100 |
Q |
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| T |
56565 |
tcatcattcaaatcgaaaactggatacgaacaagcagaaaaacatcagaaaaaggaaatttttcatataaattgaggcgaatacaacaagcagtgaagac |
56664 |
T |
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| Q |
101 |
agataaagtgagagatatgattgagaattaagaaagaccttaaaaatcgaggag-gaaaaatacgcggttgtaacttgtaatcac-aaaacaaacataga |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
56665 |
agataaagtgagagatatgattgagaattaagaaagaccttaaaaatcgaggagagaaaaatacgcggttgtaacttgtaatcacaaaaaaaaacataga |
56764 |
T |
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| Q |
199 |
aaccagcacttaatttt |
215 |
Q |
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|||||||| |||||||| |
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| T |
56765 |
aaccagcaattaatttt |
56781 |
T |
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