View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4095_low_5 (Length: 444)
Name: NF4095_low_5
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4095_low_5 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 19910228 - 19910065
Alignment:
| Q |
18 |
ctcattatatctgaaatttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaaccattgaagggttccttggcaaaataaag |
117 |
Q |
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| T |
19910228 |
ctcattatacctgagatttaaaacttattgttttttcttctccaatttttgaatttgagaatgaagatgaaccattgaaggatttcttggcaaaataaag |
19910129 |
T |
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| Q |
118 |
accttatttaaagg--nnnnnnnnccttttatttgtggattggccgggtaagtttataaatttt |
179 |
Q |
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| T |
19910128 |
gccttatttaaaggttttttttgtccttttatttgtggactggccgggtaagtttataaatttt |
19910065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 1661425 - 1661204
Alignment:
| Q |
32 |
aatttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaaccattgaagggttccttggcaaaataaagaccttatttaaagg |
131 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||| ||||| | | || |||||| ||| |||||||||||||||||| |||||||| |||| |
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| T |
1661425 |
aatttaaaacttattgttttttctcctcccatttttgaatttaacaattatggtgtaccattacaggcttccttggcaaaataaaggccttatttgaagg |
1661326 |
T |
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| Q |
132 |
---nnnnnnnnccttttatttgtggattggccgggtaagtttataaattttccatattttttctggctgcattgataaatttagttgggatgtagatatg |
228 |
Q |
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|||||||||||||| ||| || |||||||| |||||||||||| ||||||| | || |||||||| ||| || || | |||||||| | |
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| T |
1661325 |
ttttcttttgtgcttttatttgtggactggtcgagtaagtttttaaattttccat-ttttttcggactacattgatagattgagctgagctgtagatagg |
1661227 |
T |
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| Q |
229 |
gtagttgagcatggatgagtcta |
251 |
Q |
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| T |
1661226 |
gtggttgagcatggttgagtcta |
1661204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 19909687 - 19909623
Alignment:
| Q |
274 |
tatgagtgttcttattgta--gtccttgaatgtatcagtattgcaaattcatacccaagtgtctc |
336 |
Q |
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| T |
19909687 |
tatgagtgttcttattatatagtccttgaatgtatcggtattgcaaattcatacccaagtgtctc |
19909623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 19963843 - 19964099
Alignment:
| Q |
18 |
ctcattatatctgaaatttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaaccattgaagggttccttggcaaaataaag |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | || ||||||| || ||||||||||||||||||| |
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| T |
19963843 |
ctcattatgcctgaaatttaaaacttattgttttttctcctccaatttttgaatttaacaatgacggtgtaccattgcagagttccttggcaaaataaag |
19963942 |
T |
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| Q |
118 |
accttatttaaag---gnnnnnnnnccttttatttgtggattggccgggtaagtttataaattttccatattttttctggctgcattgataaatttagtt |
214 |
Q |
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| T |
19963943 |
gccttatttgaagattttcttttgtccttttatttgtggactcgccgggtaagtttataaatttttcat-ttttttctggttgcattgatagattgagct |
19964041 |
T |
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| Q |
215 |
gggatgtagatatggtagttgagcatggatgagtctacgattcttaatgccatgttat |
272 |
Q |
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| | | |||||| ||| |||||||||| ||||| | |||| ||||||||||||||| |
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| T |
19964042 |
gagctatagatagggtgattgagcatggttgagtacatgattgttaatgccatgttat |
19964099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 19964390 - 19964447
Alignment:
| Q |
275 |
atgagtgttcttattgtagtccttgaatgtatcagtattgcaaattcatacccaagtg |
332 |
Q |
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| T |
19964390 |
atgagtgttcttattatagtcattgaatgtatcaatattgcaaattcatacccaagtg |
19964447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 25490283 - 25490472
Alignment:
| Q |
33 |
atttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaaccattgaagggttccttggcaaaataaagaccttatttaaaggn |
132 |
Q |
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|||||||||||| ||||||||||||| ||||||| ||||||||||||| |||| |||||| ||||||||||| ||||||||| ||||||| || | |
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| T |
25490283 |
atttaaaacttacggttttttcttctcgaatttttaaatttgacaatgaggatgtaccattagcgggttccttggaaaaataaaggtcttatttgaa-gt |
25490381 |
T |
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| Q |
133 |
nnnnnnnccttttatttgtggattggccgggtaagtttataaattttcca--tattttttctggctgcattgataaatttagttgggatgt |
221 |
Q |
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| T |
25490382 |
tttttgtcgttttatttatggattggttgggtaagttcacaaattttccagtttctttttgtggctgcattgatagattgagttggcatgt |
25490472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 13277 - 13194
Alignment:
| Q |
29 |
tgaaatttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaaccattgaagggttccttggcaaaa |
112 |
Q |
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|||||||||||||| | ||| ||||||||||||||| ||||| ||||||||| || | || ||| ||||||||||||||||| |
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| T |
13277 |
tgaaatttaaaactcaaggttgtttcttctccaatttctgaatctgacaatgaggaagttcctttgcagggttccttggcaaaa |
13194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 7881563 - 7881508
Alignment:
| Q |
76 |
caatgaagatgaaccattgaagggttccttggcaaaataaagaccttatttaaagg |
131 |
Q |
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| T |
7881563 |
caatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttgaagg |
7881508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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