View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4095_low_9 (Length: 355)

Name: NF4095_low_9
Description: NF4095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4095_low_9
NF4095_low_9
[»] chr7 (5 HSPs)
chr7 (254-340)||(21824785-21824871)
chr7 (160-225)||(21824932-21824997)
chr7 (2-52)||(19154256-19154306)
chr7 (2-52)||(20753655-20753705)
chr7 (3-52)||(11804061-11804110)
[»] chr1 (3 HSPs)
chr1 (3-52)||(23035700-23035749)
chr1 (2-52)||(15527557-15527607)
chr1 (1-50)||(44796412-44796461)
[»] chr8 (4 HSPs)
chr8 (2-52)||(14271179-14271229)
chr8 (2-52)||(28275812-28275862)
chr8 (3-52)||(26139179-26139228)
chr8 (4-52)||(26830190-26830238)
[»] chr2 (1 HSPs)
chr2 (3-52)||(19199173-19199222)
[»] chr3 (3 HSPs)
chr3 (2-41)||(3115436-3115475)
chr3 (3-52)||(9780928-9780977)
chr3 (3-52)||(20022594-20022643)
[»] chr5 (1 HSPs)
chr5 (2-52)||(18831513-18831563)
[»] chr4 (3 HSPs)
chr4 (2-52)||(20828843-20828893)
chr4 (3-52)||(11252835-11252884)
chr4 (3-52)||(16730614-16730663)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 340
Target Start/End: Complemental strand, 21824871 - 21824785
Alignment:
Q  254 atctttcgtgtatgtgtaatgaatcattgcatttgacctagccatacttgataagcattgaccaatgagatttaatgataattattt 340  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21824871 atcttacgtgtatgtgtagtgaatcattgcatttgacctagccatacttgataagaattgaccaatgagatttaatgataattattt 21824785  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 21824997 - 21824932
Alignment:
Q  160 ccacaaccacatgaaacctttccttattaaccatgcatgtgtttttcctcattgttttgcctctag 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21824997 ccacaaccacatgaaacctttccttattaaccatgcatgtgtttttcctcattgttttgcctctag 21824932  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 19154256 - 19154306
Alignment:
Q  2 agttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  19154256 agttcatcttagaactctaacctataactacttagttacacatggtaacta 19154306  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 20753655 - 20753705
Alignment:
Q  2 agttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  20753655 agttcatcttagaactctaacctataactacttagttacacatggtaacta 20753705  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 11804061 - 11804110
Alignment:
Q  3 gttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||||||||||  | || ||||||||| ||||||||||    
T  11804061 gttcatcttagaactctaacctaaaaatatttagttacacatggtaacta 11804110  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 23035749 - 23035700
Alignment:
Q  3 gttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  23035749 gttcatcttagaactctaacctataactacttagttacacatggtaacta 23035700  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 15527607 - 15527557
Alignment:
Q  2 agttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    ||||||||||||||||||||||||| | || ||||||| | ||||||||||    
T  15527607 agttcatcttagaactctaacctataactatttagttatacatggtaacta 15527557  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44796412 - 44796461
Alignment:
Q  1 aagttcatcttagaactctaacctatgattacttagttacatatggtaac 50  Q
    |||||| |||||||||||| |||||| | |||||||||||| ||||||||    
T  44796412 aagttcgtcttagaactctcacctataactacttagttacacatggtaac 44796461  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 14271179 - 14271229
Alignment:
Q  2 agttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||| |||||||| | |||||||||||| ||||||||||    
T  14271179 agttcatcttagaactttaacctataactacttagttacacatggtaacta 14271229  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 28275862 - 28275812
Alignment:
Q  2 agttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||| |||||| ||||||||||||| | |||||||||||| ||||||||||    
T  28275862 agttaatcttataactctaacctataactacttagttacacatggtaacta 28275812  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 26139179 - 26139228
Alignment:
Q  3 gttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||||||||||  | || ||||||||| ||||||||||    
T  26139179 gttcatcttagaactctaacctaaaaatatttagttacaaatggtaacta 26139228  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 26830238 - 26830190
Alignment:
Q  4 ttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    ||||||||| ||||||||||||  |||| ||||||||| ||||||||||    
T  26830238 ttcatcttacaactctaacctaaaattatttagttacacatggtaacta 26830190  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 19199222 - 19199173
Alignment:
Q  3 gttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||||||| ||| | ||||||||||| |||||||||||    
T  19199222 gttcatcttagaactctaacttataactacttagttacctatggtaacta 19199173  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 3115475 - 3115436
Alignment:
Q  2 agttcatcttagaactctaacctatgattacttagttaca 41  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  3115475 agttcatcttagaactctaacctataactacttagttaca 3115436  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9780977 - 9780928
Alignment:
Q  3 gttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||||||||||  |  | ||||||||||||||||||||    
T  9780977 gttcatcttagaactctaacctaaaaagaattagttacatatggtaacta 9780928  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 20022643 - 20022594
Alignment:
Q  3 gttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||||||||||  || | ||||||||| ||||||||||    
T  20022643 gttcatcttagaactctaacctaaaatgatttagttacacatggtaacta 20022594  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 18831513 - 18831563
Alignment:
Q  2 agttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    ||||||||||||||||||||||||| | || ||||||||| || |||||||    
T  18831513 agttcatcttagaactctaacctataactatttagttacacatcgtaacta 18831563  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 20828893 - 20828843
Alignment:
Q  2 agttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||| |||||||| ||| |||||||||  ||||||||||    
T  20828893 agttcatcttagaactataacctataattgcttagttactcatggtaacta 20828843  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 11252884 - 11252835
Alignment:
Q  3 gttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||||||||||  | || ||||||||| ||||||||||    
T  11252884 gttcatcttagaactctaacctaaaaatatttagttacacatggtaacta 11252835  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 16730614 - 16730663
Alignment:
Q  3 gttcatcttagaactctaacctatgattacttagttacatatggtaacta 52  Q
    |||||||||||||||||||||||  | || ||||||||| ||||||||||    
T  16730614 gttcatcttagaactctaacctaaaaataattagttacacatggtaacta 16730663  T

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