View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4096_high_1 (Length: 474)

Name: NF4096_high_1
Description: NF4096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4096_high_1
NF4096_high_1
[»] chr5 (6 HSPs)
chr5 (1-235)||(20914262-20914509)
chr5 (304-390)||(20922218-20922305)
chr5 (304-384)||(20914578-20914659)
chr5 (171-228)||(20893041-20893098)
chr5 (1-137)||(20921904-20922040)
chr5 (165-218)||(20922085-20922136)
[»] chr4 (2 HSPs)
chr4 (74-154)||(43433470-43433550)
chr4 (304-375)||(43434263-43434335)
[»] scaffold0265 (5 HSPs)
scaffold0265 (304-375)||(6372-6444)
scaffold0265 (1-52)||(2587-2639)
scaffold0265 (1-52)||(7476-7528)
scaffold0265 (74-137)||(2501-2565)
scaffold0265 (74-137)||(7390-7454)
[»] chr1 (5 HSPs)
chr1 (304-375)||(21826340-21826412)
chr1 (74-131)||(21778869-21778926)
chr1 (1-52)||(21825282-21825334)
chr1 (74-137)||(21825356-21825420)
chr1 (167-199)||(21778787-21778819)
[»] chr7 (1 HSPs)
chr7 (391-454)||(12225660-12225723)
[»] chr6 (1 HSPs)
chr6 (391-454)||(10210873-10210936)
[»] chr2 (3 HSPs)
chr2 (391-454)||(23392097-23392160)
chr2 (392-459)||(42926988-42927055)
chr2 (171-229)||(8264666-8264724)
[»] chr8 (1 HSPs)
chr8 (171-229)||(27276712-27276768)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 20914262 - 20914509
Alignment:
Q  1 aagttatatgatcaagagtgtgtgtgccttggtttgattcctatgggtgatannnnnnnnnnnnnnnnnnnnngtaaagtcattcttaattgaaatgaat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||                     |||||||| |||||||||| |||||||    
T  20914262 aagttatatgattaagagtgtgtgtgccttggtttgattcctatgggtgatatttttatttttaatgatttttgtaaagtcgttcttaattggaatgaat 20914361  T
Q  101 gcatgtcattgttctttgaatggttcaagaaaatgaa--------------ggatgaacccagatttgtnnnnnnnnnggggggttggagagtgattgga 186  Q
    ||||||||||||||||||||||||| |||||||||||              ||||||||||| |||||          ||||||||||||||||||||||    
T  20914362 gcatgtcattgttctttgaatggttgaagaaaatgaattgaagaacatgaaggatgaacccaaatttg-aaaaaaaaaggggggttggagagtgattgga 20914460  T
Q  187 ttgaaaggaaaatctaattaatttgatggtttaaattgtaaaaggtcat 235  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  20914461 ttgaaatgaaaatctaattaatttgatggtttgaattgtaaaaggtcat 20914509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 304 - 390
Target Start/End: Original strand, 20922218 - 20922305
Alignment:
Q  304 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggcttcctaggtctcacc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||    
T  20922218 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattgtccaccaatttttaaaggcatcctaggtgtcacc 20922305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 20914578 - 20914659
Alignment:
Q  304 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggcttcctaggt 384  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  20914578 tttatttttatgatggaggacacgtggctgtttcgtattggtttgggttaattgcccaccaattttcaaaggcatcctaggt 20914659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 20893098 - 20893041
Alignment:
Q  171 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20893098 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaa 20893041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 20921904 - 20922040
Alignment:
Q  1 aagttatatgatcaagagtgtgtgtgccttggtttgattcctatgggtgatannnnnnnnnnnnnnnnnnnnngtaaagtcattcttaattgaaatgaat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||                     |||||| |||||||||||| |||||||    
T  20921904 aagttatatgatctagagtgtgtgtgccttggtttgattcctatgggtgatatttttatttttaatgatttttgtaaagccattcttaattggaatgaat 20922003  T
Q  101 gcatgtcattgttctttgaatggttcaagaaaatgaa 137  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  20922004 gcatgtcattgttctttgaatggttgaagaagatgaa 20922040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 20922085 - 20922136
Alignment:
Q  165 ggggggttggagagtgattggattgaaaggaaaatctaattaatttgatggttt 218  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  20922085 ggggggttggagagt--ttggattgaaagaaaaatctaattaatttgatggttt 20922136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 43433470 - 43433550
Alignment:
Q  74 gtaaagtcattcttaattgaaatgaatgcatgtcattgttctttgaatggttcaagaaaatgaaggatgaacccagatttg 154  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  43433470 gtaaagccattcttaattggaatgaatgcatgtcattgttctttgaatggttgaagaagatgaaggatgaacccagatttg 43433550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 43434263 - 43434335
Alignment:
Q  304 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggc 375  Q
    ||||||||  ||||||||||||| ||||||||| |||||||||||||| || || ||||||||||||||||||    
T  43434263 tttattttgttgatggaggacacgtggctgttttttattggtttgggtaaaatgcccaccaattttcaaaggc 43434335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 6444 - 6372
Alignment:
Q  304 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggc 375  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6444 tttatttttatgatggaggacacgtggctgtttcttattggtttgggttaattgcccaccaattttcaaaggc 6372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2639 - 2587
Alignment:
Q  1 aagttatatgatcaagagtgtgtgtgcc-ttggtttgattcctatgggtgata 52  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2639 aagttatatgatcaagagtgtgtgtgccattggtttgattcctatgggtgata 2587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7528 - 7476
Alignment:
Q  1 aagttatatgatcaagagtgtgtgtgcc-ttggtttgattcctatgggtgata 52  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7528 aagttatatgatcaagagtgtgtgtgccattggtttgattcctatgggtgata 7476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 2565 - 2501
Alignment:
Q  74 gtaaagtcattcttaattgaaatgaatgcatgtcattg-ttctttgaatggttcaagaaaatgaa 137  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  2565 gtaaagccattcttaattggaatgaatgcatgtcattgtttctttgaatggttgaagaagatgaa 2501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 7454 - 7390
Alignment:
Q  74 gtaaagtcattcttaattgaaatgaatgcatgtcattg-ttctttgaatggttcaagaaaatgaa 137  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  7454 gtaaagccattcttaattggaatgaatgcatgtcattgtttctttgaatggttgaagaagatgaa 7390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 21826340 - 21826412
Alignment:
Q  304 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggc 375  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21826340 tttatttttatgatggaggacacgtggctgtttcttattggtttgggttaattgcccaccaattttcaaaggc 21826412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 21778926 - 21778869
Alignment:
Q  74 gtaaagtcattcttaattgaaatgaatgcatgtcattgttctttgaatggttcaagaa 131  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  21778926 gtaaagccattcttaattggaatgaatgcatgtcattgttctttgaatggttgaagaa 21778869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21825282 - 21825334
Alignment:
Q  1 aagttatatgatcaagagtgtgtgtgcc-ttggtttgattcctatgggtgata 52  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21825282 aagttatatgatcaagagtgtgtgtgccattggtttgattcctatgggtgata 21825334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 21825356 - 21825420
Alignment:
Q  74 gtaaagtcattcttaattgaaatgaatgcatgtcattg-ttctttgaatggttcaagaaaatgaa 137  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  21825356 gtaaagccattcttaattggaatgaatgcatgtcattgtttctttgaatggttgaagaagatgaa 21825420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 21778819 - 21778787
Alignment:
Q  167 ggggttggagagtgattggattgaaaggaaaat 199  Q
    |||||||||||||||||||||||||||||||||    
T  21778819 ggggttggagagtgattggattgaaaggaaaat 21778787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 391 - 454
Target Start/End: Original strand, 12225660 - 12225723
Alignment:
Q  391 atctttaacccattgcatagcggtcaagagccccatcgcttcccctaaatcaacgtcaacaatc 454  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  12225660 atctttaacccattgcatagcggtcaagagccccgtcgcttcccctaaatcaatgtcaacaatc 12225723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 10210936 - 10210873
Alignment:
Q  391 atctttaacccattgcatagcggtcaagagccccatcgcttcccctaaatcaacgtcaacaatc 454  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||    
T  10210936 atctttaacccattacgtagcggtcaagagccccatcgcttcccctaaatcaacgtcgacaatc 10210873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 23392160 - 23392097
Alignment:
Q  391 atctttaacccattgcatagcggtcaagagccccatcgcttcccctaaatcaacgtcaacaatc 454  Q
    |||||||||||||||||||||||||||||| | ||| |||||||| | ||||||||||||||||    
T  23392160 atctttaacccattgcatagcggtcaagagtctcattgcttcccccacatcaacgtcaacaatc 23392097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 42926988 - 42927055
Alignment:
Q  392 tctttaacccattgcatagcggtcaagagccccatcgcttcccctaaatcaacgtcaacaatctgtga 459  Q
    |||||||||||||||||||   ||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  42926988 tctttaacccattgcatagttatcaagagtcccatcgcttcccctaaatcaacatcaacaatcggtga 42927055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 8264724 - 8264666
Alignment:
Q  171 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaaa 229  Q
    ||||||||||||||||||  | || |||| |||||| | ||||||||||||||||||||    
T  8264724 ttggagagtgattggattagaggggaaatttaattattgtgatggtttaaattgtaaaa 8264666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 27276712 - 27276768
Alignment:
Q  171 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaaa 229  Q
    ||||||||||||||||||| | ||||| |  ||||||| ||||||||||||||||||||    
T  27276712 ttggagagtgattggattggagggaaatt--aattaatgtgatggtttaaattgtaaaa 27276768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University