View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4096_low_4 (Length: 257)

Name: NF4096_low_4
Description: NF4096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4096_low_4
NF4096_low_4
[»] chr7 (5 HSPs)
chr7 (6-257)||(12138937-12139189)
chr7 (14-54)||(32735039-32735079)
chr7 (6-48)||(32733885-32733927)
chr7 (14-52)||(41237743-41237781)
chr7 (13-54)||(7202974-7203015)
[»] chr1 (2 HSPs)
chr1 (37-221)||(41466244-41466428)
chr1 (37-221)||(45320487-45320671)
[»] chr3 (3 HSPs)
chr3 (13-144)||(34826626-34826759)
chr3 (14-51)||(34825090-34825127)
chr3 (14-51)||(53145484-53145521)
[»] chr8 (2 HSPs)
chr8 (37-144)||(26520894-26521004)
chr8 (17-53)||(40646203-40646239)
[»] chr4 (2 HSPs)
chr4 (14-52)||(55010851-55010889)
chr4 (77-169)||(29059265-29059358)
[»] chr2 (2 HSPs)
chr2 (33-89)||(3230096-3230153)
chr2 (17-53)||(42946924-42946960)
[»] chr5 (2 HSPs)
chr5 (19-53)||(3958340-3958374)
chr5 (13-53)||(39149470-39149510)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 12139189 - 12138937
Alignment:
Q  6 ggtgaggtttcacatgggaaggttgattcctttcccaccatgggaaaggaggttttt-acctgcaatagccagtcaaacaagttgtcattggttttgttt 104  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  12139189 ggtgaggtttcacatgggaagattgattcttttcccaccatgggaaaggtgattttttacctgcaatagccagtcaaacaggttgccattggttttgttt 12139090  T
Q  105 ggaattgcagttgagacaaaaaatgattaatgacttattatattatagcgtgaactacacctccccattcttaaaaaataattatccacaccacaaaatc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12139089 ggaattgcagttgagacaaaaaatgattaatgacttattatattatattgtgaactacacctccccattcttaaaaaataactatccacaccacaaaatc 12138990  T
Q  205 tacacacaaaaaacacgattagccactccattcttctctcgtccttgttcttc 257  Q
     |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  12138989 cacacacaaaaaacacggttagccactccattcttctctcctccttgttcttc 12138937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 32735079 - 32735039
Alignment:
Q  14 ttcacatgggaaggttgattcctttcccaccatgggaaagg 54  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  32735079 ttcacatgggaaggttgattcctttcccatcatgggaaagg 32735039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 32733885 - 32733927
Alignment:
Q  6 ggtgaggtttcacatgggaaggttgattcctttcccaccatgg 48  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  32733885 ggtgaggtttcacatgggaaagttgattcctttcccatcatgg 32733927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 41237781 - 41237743
Alignment:
Q  14 ttcacatgggaaggttgattcctttcccaccatgggaaa 52  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  41237781 ttcacatgggaaggttgattcctttcccatcatgggaaa 41237743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 7202974 - 7203015
Alignment:
Q  13 tttcacatgggaaggttgattcctttcccaccatgggaaagg 54  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  7202974 tttcacattggaaggttaattcctttcccaccatgggaaagg 7203015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 41466244 - 41466428
Alignment:
Q  37 ttcccaccatgggaaaggaggtttt-tacctgcaatagccagtcaaacaagttgtcattggttttgtttggaattgcagttgagacaaaaaatgattaat 135  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  41466244 ttcccaccatgggaaaggtggttttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgcagctgagacaaaaaatgattaat 41466343  T
Q  136 gacttattatattatagcgtgaactacacctccccattcttaaaaaataattatccacaccacaaaatctacacacaaaaaacacg 221  Q
     |||||||||||||||  ||||||||||||| |||||| || |||||||| |||||||||||||||||| | ||||| ||||||||    
T  41466344 aacttattatattatattgtgaactacacct-cccattttttaaaaataactatccacaccacaaaatccaaacacacaaaacacg 41466428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 45320487 - 45320671
Alignment:
Q  37 ttcccaccatgggaaaggaggtttt-tacctgcaatagccagtcaaacaagttgtcattggttttgtttggaattgcagttgagacaaaaaatgattaat 135  Q
    |||||||||||||||| | | |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  45320487 ttcccaccatgggaaatgtgcttttttacctgcaatagcctgtcaaacaagttgccattggttttgtttggaattgaagctgagacaaaaaatgattaat 45320586  T
Q  136 gacttattatattatagcgtgaactacacctccccattcttaaaaaataattatccacaccacaaaatctacacacaaaaaacacg 221  Q
    ||||||||||||||||  |||||| |||||| |||||||||||||||||| ||| |||||||||||||| | ||||| ||||||||    
T  45320587 gacttattatattatattgtgaaccacacct-cccattcttaaaaaataactattcacaccacaaaatccaaacacacaaaacacg 45320671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 34826759 - 34826626
Alignment:
Q  13 tttcacatgggaaggttgattcctttcccaccatgggaaaggaggttttt-acctgcaatagccagtcaaacaagttgtcattggttttgtttggaattg 111  Q
    |||||||||||||||   | ||| || |||| |||||||| | ||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  34826759 tttcacatgggaaggggcaatccctttccactatgggaaatgtggttttttacctgcaatagcaagttaaacaggttgtcattggttttgtttggaattg 34826660  T
Q  112 cagttgagacaa-aaaatgattaatgacttatta 144  Q
    || ||||||||| |||||||||||||||||||||    
T  34826659 cacttgagacaaaaaaatgattaatgacttatta 34826626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 34825090 - 34825127
Alignment:
Q  14 ttcacatgggaaggttgattcctttcccaccatgggaa 51  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  34825090 ttcacatgggaaggtggattcctttcccatcatgggaa 34825127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 53145521 - 53145484
Alignment:
Q  14 ttcacatgggaaggttgattcctttcccaccatgggaa 51  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  53145521 ttcacatgggaaggttgattccttttcaaccatgggaa 53145484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 26520894 - 26521004
Alignment:
Q  37 ttcccaccatgggaaaggaggtttt-tacctgcaatagccagtcaaacaagttgtcattggttttgtttggaattgcagttgagac-aaaaaatgattaa 134  Q
    |||||||||||||||| | |||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||    
T  26520894 ttcccaccatgggaaatgtggttttttacctgcaatagcaagtcaaacaggttgccattggttttgtttggaattgcacttgagacaaaaaaatgattaa 26520993  T
Q  135 t-gacttatta 144  Q
    | |||||||||    
T  26520994 tggacttatta 26521004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 40646203 - 40646239
Alignment:
Q  17 acatgggaaggttgattcctttcccaccatgggaaag 53  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40646203 acatgggaaggatgattcctttcccaccatgggaaag 40646239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 55010851 - 55010889
Alignment:
Q  14 ttcacatgggaaggttgattcctttcccaccatgggaaa 52  Q
    |||||||||||||||||||||||||||||||||||||||    
T  55010851 ttcacatgggaaggttgattcctttcccaccatgggaaa 55010889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 29059265 - 29059358
Alignment:
Q  77 gtcaaacaagttgtcattggttttgtttggaattgcagttgagacaaaaaatgatt-aatgacttattatattatagcgtgaactacacctccc 169  Q
    |||||||| |||| |||||||||||||||| ||| || || || |||||||| ||| ||| |||||||||| || |  ||||||||||||||||    
T  29059265 gtcaaacatgttgacattggttttgtttggtatttcacttcagccaaaaaatcattaaataacttattatactaaattgtgaactacacctccc 29059358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 3230153 - 3230096
Alignment:
Q  33 tcctttcccaccatgggaaaggaggttttt-acctgcaatagccagtcaaacaagttg 89  Q
    |||||| ||||||||||||||| ||||||| |||||||||||| ||||||||| ||||    
T  3230153 tccttttccaccatgggaaaggtggttttttacctgcaatagcaagtcaaacaggttg 3230096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 42946924 - 42946960
Alignment:
Q  17 acatgggaaggttgattcctttcccaccatgggaaag 53  Q
    ||||||||||| |||||||||||||||||||||||||    
T  42946924 acatgggaaggatgattcctttcccaccatgggaaag 42946960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 3958340 - 3958374
Alignment:
Q  19 atgggaaggttgattcctttcccaccatgggaaag 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  3958340 atgggaagggtgattcctttcccaccatgggaaag 3958374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 39149510 - 39149470
Alignment:
Q  13 tttcacatgggaaggttgattcctttcccaccatgggaaag 53  Q
    ||||||||||||| | ||| |||||||||||||||||||||    
T  39149510 tttcacatgggaaaggtgaatcctttcccaccatgggaaag 39149470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University