View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4096_low_7 (Length: 201)

Name: NF4096_low_7
Description: NF4096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4096_low_7
NF4096_low_7
[»] chr8 (19 HSPs)
chr8 (14-183)||(1251519-1251689)
chr8 (14-185)||(38606868-38607041)
chr8 (96-183)||(1240943-1241030)
chr8 (29-185)||(5573691-5573849)
chr8 (36-185)||(29367095-29367245)
chr8 (16-154)||(31596693-31596832)
chr8 (14-154)||(33286113-33286254)
chr8 (41-185)||(5322002-5322148)
chr8 (15-156)||(31273632-31273774)
chr8 (16-185)||(32959458-32959629)
chr8 (75-185)||(15714735-15714847)
chr8 (54-154)||(26493408-26493507)
chr8 (29-131)||(38606734-38606837)
chr8 (54-133)||(15714626-15714706)
chr8 (17-83)||(24576204-24576270)
chr8 (101-150)||(24575974-24576023)
chr8 (44-133)||(26914613-26914702)
chr8 (96-133)||(5321936-5321973)
chr8 (50-134)||(15233314-15233399)
[»] chr4 (25 HSPs)
chr4 (18-185)||(16583496-16583665)
chr4 (36-185)||(55666866-55667015)
chr4 (14-185)||(9808970-9809143)
chr4 (14-185)||(9810656-9810829)
chr4 (16-186)||(8740830-8741002)
chr4 (36-184)||(17633382-17633532)
chr4 (16-185)||(33179799-33179970)
chr4 (18-166)||(19596680-19596832)
chr4 (104-184)||(2433699-2433779)
chr4 (110-185)||(33249656-33249732)
chr4 (42-134)||(24669270-24669363)
chr4 (108-185)||(1966873-1966950)
chr4 (69-185)||(35544460-35544577)
chr4 (29-130)||(1966741-1966841)
chr4 (96-152)||(20874812-20874868)
chr4 (108-146)||(1966978-1967016)
chr4 (29-133)||(14351160-14351265)
chr4 (15-87)||(19746962-19747034)
chr4 (15-87)||(19792772-19792844)
chr4 (16-66)||(23048936-23048986)
chr4 (17-83)||(25007646-25007711)
chr4 (96-133)||(24669152-24669189)
chr4 (36-131)||(19596882-19596979)
chr4 (37-127)||(9810866-9810958)
chr4 (54-133)||(42908666-42908745)
[»] chr7 (22 HSPs)
chr7 (16-185)||(31303351-31303522)
chr7 (14-185)||(18312723-18312895)
chr7 (14-185)||(20556662-20556835)
chr7 (16-154)||(21548351-21548489)
chr7 (101-185)||(21589607-21589692)
chr7 (15-133)||(28805116-28805235)
chr7 (14-185)||(5083832-5084004)
chr7 (101-185)||(4290811-4290895)
chr7 (56-184)||(15958358-15958485)
chr7 (36-133)||(21589721-21589819)
chr7 (16-185)||(32964651-32964831)
chr7 (29-134)||(32964848-32964954)
chr7 (37-133)||(18312924-18313021)
chr7 (29-133)||(21548550-21548654)
chr7 (37-133)||(22033158-22033254)
chr7 (23-131)||(31303553-31303661)
chr7 (68-185)||(22740699-22740818)
chr7 (15-82)||(5174792-5174859)
chr7 (37-113)||(22032980-22033056)
chr7 (29-113)||(28804893-28804978)
chr7 (123-152)||(2887201-2887230)
chr7 (121-154)||(28805061-28805094)
[»] chr6 (21 HSPs)
chr6 (16-184)||(22608259-22608428)
chr6 (18-185)||(3222332-3222500)
chr6 (19-154)||(23595055-23595191)
chr6 (14-185)||(33815056-33815222)
chr6 (57-184)||(10304741-10304870)
chr6 (17-133)||(7706758-7706876)
chr6 (37-184)||(9474553-9474697)
chr6 (15-154)||(11108148-11108288)
chr6 (38-133)||(9068503-9068599)
chr6 (121-185)||(138755-138820)
chr6 (121-185)||(146776-146841)
chr6 (29-133)||(2430513-2430618)
chr6 (16-184)||(3620801-3620970)
chr6 (88-133)||(2430650-2430695)
chr6 (27-128)||(7915696-7915798)
chr6 (29-133)||(2835060-2835165)
chr6 (14-130)||(24386312-24386429)
chr6 (51-129)||(10304629-10304707)
chr6 (29-133)||(30056032-30056138)
chr6 (14-130)||(20084572-20084689)
chr6 (122-154)||(9068411-9068443)
[»] chr2 (13 HSPs)
chr2 (14-186)||(43900424-43900598)
chr2 (16-185)||(30906091-30906262)
chr2 (16-185)||(45305865-45306035)
chr2 (29-133)||(1400680-1400785)
chr2 (69-181)||(7378513-7378625)
chr2 (103-185)||(28527363-28527445)
chr2 (96-154)||(1400846-1400903)
chr2 (29-133)||(28527230-28527334)
chr2 (31-133)||(33667413-33667516)
chr2 (38-134)||(34175205-34175302)
chr2 (31-127)||(41212411-41212507)
chr2 (38-119)||(34175064-34175146)
chr2 (130-185)||(33667328-33667384)
[»] chr3 (29 HSPs)
chr3 (15-185)||(44080153-44080325)
chr3 (14-183)||(3823547-3823720)
chr3 (19-182)||(11509804-11509969)
chr3 (14-183)||(3785858-3786030)
chr3 (53-185)||(42637996-42638130)
chr3 (14-185)||(22432233-22432399)
chr3 (14-154)||(9710795-9710931)
chr3 (16-183)||(19280098-19280265)
chr3 (15-185)||(1705710-1705880)
chr3 (104-186)||(31545603-31545686)
chr3 (117-185)||(4169145-4169214)
chr3 (75-185)||(5341833-5341945)
chr3 (15-130)||(27040683-27040799)
chr3 (32-134)||(27335303-27335406)
chr3 (43-185)||(26308680-26308824)
chr3 (31-154)||(23163242-23163366)
chr3 (15-82)||(31545423-31545490)
chr3 (102-150)||(41571828-41571876)
chr3 (29-119)||(5341988-5342079)
chr3 (29-134)||(18733572-18733677)
chr3 (37-133)||(11501368-11501465)
chr3 (29-130)||(19280298-19280400)
chr3 (16-133)||(27326164-27326282)
chr3 (16-133)||(27332401-27332519)
chr3 (117-186)||(42481300-42481370)
chr3 (69-133)||(39126263-39126328)
chr3 (16-87)||(4169236-4169305)
chr3 (29-133)||(11510032-11510138)
chr3 (54-133)||(31545714-31545794)
[»] scaffold1126 (2 HSPs)
scaffold1126 (13-185)||(249-423)
scaffold1126 (29-130)||(114-217)
[»] chr5 (19 HSPs)
chr5 (22-185)||(22169361-22169526)
chr5 (103-185)||(35922718-35922801)
chr5 (15-183)||(31189473-31189645)
chr5 (14-154)||(36169405-36169545)
chr5 (101-184)||(38522009-38522092)
chr5 (17-185)||(13312498-13312667)
chr5 (17-185)||(33959020-33959189)
chr5 (15-147)||(43461780-43461912)
chr5 (54-133)||(13312696-13312776)
chr5 (38-133)||(15221662-15221758)
chr5 (94-185)||(42034735-42034825)
chr5 (43-133)||(19621565-19621656)
chr5 (36-133)||(22169555-22169652)
chr5 (29-130)||(42034857-42034959)
chr5 (16-133)||(43262793-43262911)
chr5 (17-113)||(35922607-35922704)
chr5 (38-83)||(16095533-16095578)
chr5 (37-133)||(35922830-35922927)
chr5 (38-133)||(7156000-7156096)
[»] scaffold0126 (1 HSPs)
scaffold0126 (11-154)||(21552-21694)
[»] chr1 (23 HSPs)
chr1 (23-186)||(34490094-34490257)
chr1 (109-185)||(29677125-29677202)
chr1 (107-185)||(25238467-25238545)
chr1 (29-133)||(13350894-13350999)
chr1 (104-185)||(29167850-29167931)
chr1 (37-130)||(34490289-34490383)
chr1 (54-186)||(38951840-38951977)
chr1 (96-185)||(42604197-42604287)
chr1 (54-154)||(34364169-34364268)
chr1 (37-133)||(2570006-2570102)
chr1 (19-147)||(517492-517623)
chr1 (30-80)||(34941712-34941762)
chr1 (38-130)||(5831633-5831726)
chr1 (69-133)||(9929870-9929935)
chr1 (16-185)||(5831431-5831601)
chr1 (69-130)||(29167757-29167818)
chr1 (54-134)||(5855201-5855282)
chr1 (73-184)||(9468064-9468176)
chr1 (54-126)||(9929662-9929735)
chr1 (96-131)||(38244801-38244836)
chr1 (27-133)||(38952005-38952112)
chr1 (29-75)||(13351042-13351088)
chr1 (29-133)||(29676992-29677096)
[»] scaffold0123 (1 HSPs)
scaffold0123 (105-185)||(24061-24141)
[»] scaffold0251 (1 HSPs)
scaffold0251 (17-154)||(10687-10825)
[»] scaffold0043 (1 HSPs)
scaffold0043 (16-133)||(86873-86991)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 1251689 - 1251519
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||||| ||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  1251689 aagaataaagattggtagacatccttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatatgatttgtgagaccacattttt 1251590  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttt 183  Q
    |||||||||||||||||||||| || |||||||||||| ||||||||||||||||| | ||||||||||||    
T  1251589 tcagttgcgtgaccactatttaaaacctgaaaaatgtgatcatgaactaaaatgtgcgcgaccactatttt 1251519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 38607041 - 38606868
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||| |||||  ||||||||||||||||| | ||||| |||| | ||||||||||||    
T  38607041 aagaataaatattggtagacatccttaatgtgtacacccctttgtacaactctccaaaatttcagttaactacatatatggtttgcgtgaccacattttt 38606942  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||    
T  38606941 tcagttgcgttaccactatttagaagctgaaaaatgtggtcacgcaacgaaaatgcgtgtgaccactatttttc 38606868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 1241030 - 1240943
Alignment:
Q  96 tgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttt 183  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1241030 tgtgagaccatattttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgcgtgaccactatttt 1240943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 5573691 - 5573849
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||||||||  |||||||| || |||||| || ||| ||| |||||||||||| ||| ||||||| | || ||| ||||||||||| |||||||||||    
T  5573691 tagacatcctttgtgtgtacacccttttgtatcattctcgaacatttcagttaaccaaatatatgatatatgtgactacattttttcaattgcgtgacca 5573790  T
Q  128 ctatttagaagctgaaaaatgtggtcat-gaactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||| |||||||||||||||| |||||||||||   ||||||||||||||||    
T  5573791 ctatttagaagttgaaaaatgtggtcatggaactaaaatgcacgtgaccactatttttc 5573849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 29367245 - 29367095
Alignment:
Q  36 ccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattta 134  Q
    |||||||||||||| ||||| ||| ||||||||||||||| | ||||||||| ||||| | | ||  |||| ||||||||| ||| |||||||||||||     
T  29367245 ccttaatgtgtacacccctt-gtatcactcttgaaaattttaattaactaaatatatggtctatgtaaccatattttttcaattgtgtgaccactatttt 29367147  T
Q  135 gaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||||| | |||||||||| | ||||||||||||||||    
T  29367146 gaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttc 29367095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 31596693 - 31596832
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||||| ||||||  |||||| |||||| | |||||||||||| |  |||||| |||||||  ||| ||||| | |||| ||||||||||||||    
T  31596693 gaataaagattggtagacactcttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatatggtatgtgtgaccacattttttc 31596792  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  31596793 agttgcgttaccactatttagaagatgaaaaatgtggtca 31596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 33286113 - 33286254
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||||| | |||| |||||||||||||| || |||||||| ||||  |||| || | ||||| ||| ||||| | || | ||||||||||||    
T  33286113 aagaataaagattggtggacacccttaatgtgtacacccatttgtacccctctaaaaaaatttaattaaccaaatatatggtctgcgtgaccacattttt 33286212  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    ||| ||||||||||||| ||||||||||||||||||||||||    
T  33286213 tcaattgcgtgaccactttttagaagctgaaaaatgtggtca 33286254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 41 - 185
Target Start/End: Complemental strand, 5322148 - 5322002
Alignment:
Q  41 atgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagc 139  Q
    |||||||||  |||||||| ||||||  ||||||||| ||||| ||| ||||| | |||| || |||||||||||| |||||||| || |||||||||||    
T  5322148 atgtgtacactcctttgtatcactctcaaaaatttcaattaaccaaatatatggtctgtgtgatcacattttttcaattgcgtgatcattatttagaagc 5322049  T
Q  140 tgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||| || ||| | |||||||||| | ||||||||||||||||    
T  5322048 tgaaaaatatgatcacgcaactaaaatgcgcgtgaccactatttttc 5322002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 31273774 - 31273632
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    ||||||||||||| |||| |  ||||||||||| | |  ||||||||||||| |||||||||| ||||  ||| ||||| | | || | |||||| ||||    
T  31273774 agaataaagattggtagatactcttaatgtgtatacctttttgtaccactctcgaaaatttcaattaatcaaatatatggtctatgtggccacatgtttt 31273675  T
Q  114 cagttgcgtgaccactatttagaagctgaaaaatgtggtcatg 156  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  31273674 cagttgcgtgacccctatttagaagctgaaaaatatggtcatg 31273632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 32959458 - 32959629
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||||| |||||| | || |||| |||| | |||||||| | | | |||| ||||  ||||| ||| | |||||||||| || |||||||||||    
T  32959458 gaataaagattggtagacaccttttatgtctacaccactttgtacaattatggaaattttcgattaaccaaatacatgatttgtgtgatcacattttttc 32959557  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtca-tgaactaaaatgtgtgtgaccactatttttc 185  Q
    | || ||||||||| ||| ||||||| |||||| ||||||   |||||||||||||||||||||||||||||    
T  32959558 aattacgtgaccaccattaagaagctaaaaaatatggtcacacaactaaaatgtgtgtgaccactatttttc 32959629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 15714847 - 15714735
Alignment:
Q  75 tcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtg 172  Q
    ||||||||||||| ||||| | ||||  ||||||||||||||| || ||||| |||||||| |||||||||||| |||||| | |||||||||||  |||    
T  15714847 tcagttaactaaatatatggtctgtgtaaccacattttttcagctgtgtgactactatttaaaagctgaaaaatatggtcacgtaactaaaatgtccgtg 15714748  T
Q  173 accactatttttc 185  Q
    |||||||||||||    
T  15714747 accactatttttc 15714735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 26493507 - 26493408
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaactaaaatatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtc 153  Q
    ||||||||||| || ||||||||| ||||| ||| |||  |||||| || |||||||||||||||| || || |||||||||||||||||||||||||||    
T  26493507 tttgtaccacttttaaaaatttcaattaaccaaa-tatattttgtgtgatcacattttttcagttgtgtaactactatttagaagctgaaaaatgtggtc 26493409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 38606734 - 38606837
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||||||||||| | || | ||||||||||||||||  ||||||||||||||||||| ||||| | |||| ||||| ||||||| || ||||||||||    
T  38606734 tagacatccttaatctttagacccctttgtaccactctgaaaaatttcagttaactaaatatatggtatgtgtgaccatatttttttagctgcgtgacca 38606833  T
Q  128 ctat 131  Q
    ||||    
T  38606834 ctat 38606837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 15714626 - 15714706
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||||||||||  ||||||||||||| ||||| ||||||||| || ||||||||||| | |||||||||||||||||||    
T  15714626 tttgtaccactctgaaaaatttcagttagctaaatatatgatttatgtgaccacattttgttagttgcgtgaccactattt 15714706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 24576270 - 24576204
Alignment:
Q  17 aataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaac 83  Q
    ||||||||||| |||||| || ||||||||||| |||||||||||||||| |||||||||| |||||    
T  24576270 aataaagattggtagacacccgtaatgtgtacacccctttgtaccactctcgaaaatttcaattaac 24576204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 24576023 - 24575974
Alignment:
Q  101 gaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtg 150  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||||||||    
T  24576023 gaccacattttttgagtttcgttaccactatttagaagctgaaaaatgtg 24575974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 26914613 - 26914702
Alignment:
Q  44 tgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||| ||||||| |  |||||  ||||||| || |||||||| |||||||||||| || |||||||||| |||| ||||||||||||||    
T  26914613 tgtacatccctttgcattactctgaaaaatttaagctaactaaatatatgatttgtgtgatcacatttttt-agttacgtgaccactattt 26914702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 5321936 - 5321973
Alignment:
Q  96 tgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  5321936 tgtgtgaccacatttttttagttgcgtgaccactattt 5321973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 15233399 - 15233314
Alignment:
Q  50 accctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattta 134  Q
    |||||||||||||||||  ||||||| |||||| |||| ||||  |||||| |||||||||| |  || ||| |||||||||||||    
T  15233399 accctttgtaccactctgaaaaattttagttaattaaatatatagtttgtgtgaccacatttatctaggtgcttgaccactattta 15233314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 16583496 - 16583665
Alignment:
Q  18 ataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcag 116  Q
    |||||||||| |||||| |||||||| ||||| |||||||||||||||| |||||||||||||||| ||| ||||| ||  || ||||||||||||||||    
T  16583496 ataaagattggtagacacccttaatgcgtacatccctttgtaccactctcgaaaatttcagttaaccaaatatatggttgatgtgaccacattttttcag 16583595  T
Q  117 ttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||| | ||||||||||||||||    
T  16583596 ttgcgtgaccactatttagaagctgaaaaatatgatcatgcaactaaaatgcgcgtgaccactatttttc 16583665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 55667015 - 55666866
Alignment:
Q  36 ccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattta 134  Q
    ||||||| ||||||  ||||||||||||| | |||||||||||||||||||| ||||| | |||| |||||||||||| |||||||||||||| ||||||    
T  55667015 ccttaatatgtacactcctttgtaccactttcgaaaatttcagttaactaaatatatggtctgtgtgaccacattttt-cagttgcgtgaccattattta 55666917  T
Q  135 gaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttttc 185  Q
     ||||||||||| ||||||| ||||||||||||  ||||||||||||||||    
T  55666916 taagctgaaaaacgtggtcacgaactaaaatgttcgtgaccactatttttc 55666866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 9808970 - 9809143
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||| | | |||| ||||||| |||||| || |||||||| || |  |||| |||||||||||||| ||||| | || | ||||||||||||    
T  9808970 aagaataaagataggttgacacccttaatatgtacacccttttgtaccgctatgaaaaaattcagttaactaaatatatggtctgcgtgaccacattttt 9809069  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||| ||||| | ||||||||||||||||    
T  9809070 tcagttgcgtgaccactatttagaagctgaaaaatgtagtcacgcaactcaaatgcgcgtgaccactatttttc 9809143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 9810656 - 9810829
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||| | | |||| ||||||| |||||| || ||||||||||| |  |||||||||||||| |||| ||||| |||| |  |||||||||||    
T  9810656 aagaataaagataggttgacacccttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatatggtttgcgttaccacattttt 9810755  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||||||||||||| |||||||| |||| | |||| ||||||| |||||| |||||||||    
T  9810756 tcagttgcgtgaccactatttagaagctaaaaaatgtagtcacgcaactcaaatgtgcgtgacctctatttttc 9810829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 8741002 - 8740830
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaaa-tatgatttgtgagaccacatttttt- 113  Q
    |||||||||| | |||||||| | ||||||||||  | |||||| ||||||  ||| ||||||||||  |||  |||||| |||| ||||| |||||||     
T  8741002 gaataaagatcggtagacatcttcaatgtgtacattcttttgtatcactctcaaaattttcagttaatcaaatgtatgatctgtgtgaccatattttttt 8740903  T
Q  114 cagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttttct 186  Q
    ||||||||||| ||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||    
T  8740902 cagttgcgtgatcactatttagaagctgaaaaatgtggtcacgtactaaaatgcgcgtgaccactatttttct 8740830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 17633532 - 17633382
Alignment:
Q  36 ccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattta 134  Q
    ||||||| |||||| |||||||||||||| |  ||||||||||||||| ||| ||||| | |||| |||||||||||||||||||||||||||| || ||    
T  17633532 ccttaatatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccac-atcta 17633434  T
Q  135 gaag-ctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactattttt 184  Q
    ||||  |||||||| |||||| | |||||||||| | |||||||||||||||    
T  17633433 gaagtttgaaaaatatggtcacgcaactaaaatgcgcgtgaccactattttt 17633382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 33179970 - 33179799
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||| ||||| ||||||||||||||||||| |   |||| ||||||| | |||||||| | ||||||||| ||||| | ||||  |||| || |||||    
T  33179970 gaataatgattggtagacatccttaatgtgtatatttctttataccactatcgaaaattttaattaactaaatatatggtatgtgttaccatatcttttc 33179871  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtca-tgaactaaaatgtgtgtgaccactatttttc 185  Q
    || ||||||||||||||||||||  |||||||||||| ||   |||||||||| ||||||||||||||||||    
T  33179870 agctgcgtgaccactatttagaaagtgaaaaatgtggccacacaactaaaatgcgtgtgaccactatttttc 33179799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 19596680 - 19596832
Alignment:
Q  18 ataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccaca--ttttttc 114  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||  ||||| || ||| || ||| ||||| |  | | |||||||  |||||||    
T  19596680 ataaagattgatagacatctttaatgtgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggtcagcgtgaccacattttttttc 19596779  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatg 166  Q
    || || || |||| |||||||||||||||||||||||||| | ||||||||||    
T  19596780 agctgtgtaaccattatttagaagctgaaaaatgtggtcacgcaactaaaatg 19596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 2433699 - 2433779
Alignment:
Q  104 cacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactattttt 184  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||   |||||||||||||||    
T  2433699 cacattttttcagttgtttgaccactatttagaagctgaaaaatgtggtcatgaaaaaaaatgcacgtgaccactattttt 2433779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 33249732 - 33249656
Alignment:
Q  110 ttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaac-taaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||| ||||||||||||||||||    
T  33249732 ttttcagttgcgtgaccactatttagaaggtgaaaaatgtggtcacgcacataaaatgcgtgtgaccactatttttc 33249656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 24669363 - 24669270
Alignment:
Q  42 tgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattta 134  Q
    |||||||| ||||||||||||||||  ||||||| ||||||  ||| ||||| | |||| ||||||||||||||||||||||||||||||||||    
T  24669363 tgtgtacacccctttgtaccactctgaaaaatttaagttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactattta 24669270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 1966950 - 1966873
Alignment:
Q  108 ttttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | |||| ||||| | ||||||||||||||||    
T  1966950 tttttttagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaact-aaatgcgcgtgaccactatttttc 1966873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 35544577 - 35544460
Alignment:
Q  69 aaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatg 166  Q
    ||||||||||||||  ||| ||||| | |||| || ||||||||||| ||||  ||||||||||||||||||||||||||||||||| | |||| |||||    
T  35544577 aaaatttcagttaatcaaatatatggtatgtgtgatcacattttttccgttgtatgaccactatttagaagctgaaaaatgtggtcacgcaact-aaatg 35544479  T
Q  167 tgtgtgaccactatttttc 185  Q
     |||||| |||||||||||    
T  35544478 cgtgtgatcactatttttc 35544460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 1966741 - 1966841
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| ||||| ||| |||| || |||||||||||| ||||||||||||||||| ||| ||||| | |||| ||||||||||||| |||||||||||||    
T  1966741 tagacacccttactgtatacacccttttgtaccactc-tgaaaatttcagttaaccaaatatatggtctgtgtgaccacatttttt-agttgcgtgacca 1966838  T
Q  128 cta 130  Q
    |||    
T  1966839 cta 1966841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 20874812 - 20874868
Alignment:
Q  96 tgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggt 152  Q
    |||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||||    
T  20874812 tgtgtgaccatattttttcagttgcgtgatcactttttagaagctgaaaaatgtggt 20874868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 1967016 - 1966978
Alignment:
Q  108 ttttttcagttgcgtgaccactatttagaagctgaaaaa 146  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1967016 ttttttcagttgcgtgaccactatttagaagctgaaaaa 1966978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 14351265 - 14351160
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| ||||||||||| ||   ||||||||||||||  |||| || ||||||| ||| ||||| |||||| ||||| ||||||  |||||||||||||    
T  14351265 tagacacccttaatgtgtgcacttctttgtaccactctcaaaaaatttagttaaccaaatatatggtttgtgtgaccatatttttctagttgcgtgacca 14351166  T
Q  128 ctattt 133  Q
    ||||||    
T  14351165 ctattt 14351160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 19747034 - 19746962
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa 87  Q
    ||||||||||||  ||||||   |||||||||||| ||||||||| || ||| ||||||||||||||||||||    
T  19747034 agaataaagattagtagacacttttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaa 19746962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 19792772 - 19792844
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa 87  Q
    ||||||||||||  ||||||   |||||||||||| ||||||||| || ||| ||||||||||||||||||||    
T  19792772 agaataaagattagtagacacttttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaa 19792844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 23048936 - 23048986
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactct 66  Q
    |||||||||||||||||||| ||||||||||||| || |||||| ||||||    
T  23048936 gaataaagattgatagacattcttaatgtgtacacccgtttgtaacactct 23048986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 25007711 - 25007646
Alignment:
Q  17 aataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaac 83  Q
    ||||||||||| ||||||  |||||||| |||| |||||||||||| ||| ||||||||||||||||    
T  25007711 aataaagattggtagacactcttaatgtataca-ccctttgtaccattctcgaaaatttcagttaac 25007646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 24669152 - 24669189
Alignment:
Q  96 tgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24669152 tgtgtgaccacattttttcagttgcgtgaccactattt 24669189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 19596979 - 19596882
Alignment:
Q  36 ccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccaca-ttttttcagttgcgtgaccactat 131  Q
    |||||||||||||| || ||||||||  | | |||||||||||||||| ||| ||||| |  ||| ||||||| |||||| || ||||||||||||||    
T  19596979 ccttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacattttttttagctgcgtgaccactat 19596882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 9810958 - 9810866
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccaca-ttttttcagttgcgtgacca 127  Q
    ||||||||||| | |  ||||||||||||| |||| ||| ||||||| ||| ||||| | |||| ||||||| |||||| |||||||||||||    
T  9810958 cttaatgtgtaaacctatttgtaccactctagaaattttaagttaaccaaatatatggtctgtgtgaccacattttttttagttgcgtgacca 9810866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 42908745 - 42908666
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||||||||||  ||||||| ||||||| ||| ||||| | |||| ||||||||||||| ||||| || ||||||||||    
T  42908745 tttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttttt-agttgagtcaccactattt 42908666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 31303351 - 31303522
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||||| |||||| |||||||||||||| || |||||| ||||||  ||||||||||| ||| ||| | ||| | || | ||||||||||||||    
T  31303351 gaataaagattggtagacacccttaatgtgtacatccatttgtatcactctgaaaaatttcagtcaaccaaatacatggtctgcgtgaccacattttttc 31303450  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31303451 aattgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgtgcgtgaccactatttttc 31303522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 18312723 - 18312895
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacattttt 112  Q
    |||||||||||||| |||||| |||||| ||||| | |||||||||||||||| |||||||||| |||| | || ||||| | | || |||||||| |||    
T  18312723 aagaataaagattggtagacacccttaacgtgtatacccctttgtaccactctcgaaaatttcaattaatcaaatatatggtctctgtgaccacatattt 18312822  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||| || ||||||||||||||| |||||||| ||| | ||||||||||  |||||||||||||||||    
T  18312823 tcagttgcgtcactactatttagaagctg-aaaatgtgctcacgcaactaaaatgcatgtgaccactatttttc 18312895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 20556662 - 20556835
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||| | |||||| |||||||||||| | | ||||||   ||||| |||||||||||||||| ||| ||||| |  ||| ||||| ||||||    
T  20556662 aagaataaagatcggtagacacccttaatgtgtatatctctttgtgttactctcgaaaatttcagttaaccaaatatatggtcggtgtgaccatattttt 20556761  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |||||||||  | ||||||| ||||||||    
T  20556762 tcagttgtgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatacgcgtgaccaatatttttc 20556835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 21548351 - 21548489
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaaatatgatttgtgagaccacattttttca 115  Q
    |||||||||| | |||||| | ||||| | ||||   ||||||||||||||||||||||||||||||  |||||||| | |||| ||||| |||||||||    
T  21548351 gaataaagatcggtagacacctttaatatatacacttctttgtaccactcttgaaaatttcagttaatcaaaatatggtatgtgtgaccatattttttca 21548450  T
Q  116 gttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    |||| ||||||| |||||| |||||||||||||||||||    
T  21548451 gttgtgtgaccaatatttaaaagctgaaaaatgtggtca 21548489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 21589607 - 21589692
Alignment:
Q  101 gaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  21589607 gaccatattttttcagttgtgtgatcactatttagaagctgaaaaatgtggtcatgcaactaaaatgcgtgtgaccactatttttc 21589692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 28805235 - 28805116
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    ||||||||||||| |||||| |||||||||||| | ||||||||| ||||||  ||||||| ||||||| ||| ||||| | |||| |||||||||||||    
T  28805235 agaataaagattggtagacacccttaatgtgtatacccctttgtatcactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttttt 28805136  T
Q  114 cagttgcgtgaccactattt 133  Q
    ||||||||||| ||| ||||    
T  28805135 cagttgcgtgatcacgattt 28805116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 5084004 - 5083832
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||||| || | | | ||||||| |||| |||||||||  | ||| |||||||||| || |  ||| ||||| | |||| ||||||||||||    
T  5084004 aagaataaagattggtaaatacctttaatgtatacacccctttgtattattctcgaaaatttcaattcatcaaatatatggtatgtgtgaccacattttt 5083905  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||| |||||||||||||||||||||| |||||||| |||||| | |||| ||||| | ||||||||||||||||    
T  5083904 tcaattgcgtgaccactatttagaagttgaaaaatatggtcacgcaact-aaatgcgggtgaccactatttttc 5083832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 4290811 - 4290895
Alignment:
Q  101 gaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||| || |||| ||||||||||||||||    
T  4290811 gaccacattttttcagttgagtgaccactatttagaagttgaaaaatgtggtcacgcaact-aagtgtgcgtgaccactatttttc 4290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 15958485 - 15958358
Alignment:
Q  56 tgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    |||||||||||  ||||||||||||||||||| ||||| | |||| ||||||||||||  |||||| |||| ||||||||||||||||||||||||||||    
T  15958485 tgtaccactctgtaaaatttcagttaactaaatatatggtctgtgtgaccacattttta-agttgcatgac-actatttagaagctgaaaaatgtggtca 15958388  T
Q  155 tgaactaaaatgtgtgtgaccactattttt 184  Q
     | | | ||||||| |||| ||| ||||||    
T  15958387 cgcaattaaatgtgcgtgatcacaattttt 15958358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 21589819 - 21589721
Alignment:
Q  36 ccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||||||||||| || ||| |||||||||  ||||||||||||| | ||| ||||| | |||| ||||||||||||| |||||| ||||||||||||    
T  21589819 ccttaatgtgtacatccgtttataccactctaaaaaatttcagttatccaaatatatggtctgtgtgaccacatttttttagttgcatgaccactattt 21589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 32964651 - 32964831
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||||| |||||||||||||||||||||  | |||  ||||||||  | ||||| ||||||||||| ||||| | |||| ||||| | ||||||    
T  32964651 gaataaagattggtagacatccttaatgtgtacattcatttacaccactctaaagaatttaagttaactaaatatatggtatgtgtgaccata-tttttc 32964749  T
Q  115 agttgcgtgaccact----------atttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    | ||| |||||||||          |||||||||||||||||| |||||||| ||||||||||   ||||||||||||||||    
T  32964750 aattgtgtgaccactattttccagcatttagaagctgaaaaatatggtcatgtaactaaaatgcacgtgaccactatttttc 32964831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 32964954 - 32964848
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| | ||||||| |||| || |||||| ||||||  ||||||| ||||||||| | ||||| | |||| |||||||| |||| |||||||||||||    
T  32964954 tagacacctttaatgtatacacccttttgtatcactctaaaaaatttaagttaactatatatatggtctgtgtgaccacatatttttagttgcgtgacca 32964855  T
Q  128 ctattta 134  Q
    |||||||    
T  32964854 ctattta 32964848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 18313021 - 18312924
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||||||| |||  |||||||||||||||  |||||||||| |||| ||| ||||| |||||| | | | ||||||| |||||||||||||||||||    
T  18313021 cttaatgtgcacactcctttgtaccactctgaaaaatttcagctaaccaaatatatggtttgtgtggctaaatttttttagttgcgtgaccactattt 18312924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 21548654 - 21548550
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    ||||||||||||||||||| |  |||| |||||| |||  ||||||||||||||||||| ||||| | |||| || || |||| || |||||||||||||    
T  21548654 tagacatccttaatgtgtatattcctt-gtaccattctaaaaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgacca 21548556  T
Q  128 ctattt 133  Q
    ||||||    
T  21548555 ctattt 21548550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 22033254 - 22033158
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||||||||||| || ||||||||| |||  ||||||| ||||||| ||| ||||| | |||| ||||| ||||||| |||||||||||||||||||    
T  22033254 cttaatgtgtacatcc-tttgtaccattctgaaaaattttagttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactattt 22033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 31303661 - 31303553
Alignment:
Q  23 gattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcg 121  Q
    ||||| |||||| | ||||||| |||| || ||| ||||||||   ||||||||||||||| ||| ||||| | |||| ||||||||||||| |||||||    
T  31303661 gattggtagacacctttaatgtctacatccttttataccactcaaaaaaatttcagttaacaaaatatatggtatgtgtgaccacatttttt-agttgcg 31303563  T
Q  122 tgaccactat 131  Q
    ||||||||||    
T  31303562 tgaccactat 31303553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 22740818 - 22740699
Alignment:
Q  68 gaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt-cagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaa 164  Q
    |||||||||| ||||||||| ||||  ||||||  |||||||||||| |||||| ||||||| |||||| |||||||||||| |||||| | ||||||||    
T  22740818 gaaaatttcaattaactaaatatatagtttgtgtaaccacatttttttcagttgtgtgacca-tatttaaaagctgaaaaatatggtcacgcaactaaaa 22740720  T
Q  165 tgtgtgtgaccactatttttc 185  Q
    | || |||| || ||||||||    
T  22740719 tatgcgtgatcattatttttc 22740699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 5174792 - 5174859
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa 82  Q
    |||||||||||  ||| |||| ||||||||||||| | ||||||||||| || |||||||||||||||    
T  5174792 agaataaagatcaataaacattcttaatgtgtacatctctttgtaccacgctcgaaaatttcagttaa 5174859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 22032980 - 22033056
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    ||||||||||||| || |||||||||||||| ||||||| ||||||| ||| ||||| | |||| |||||||||||||    
T  22032980 cttaatgtgtacatcc-tttgtaccactctttaaaatttaagttaaccaaatatatggtatgtgtgaccacatttttt 22033056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 28804893 - 28804978
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    |||||| ||||||| |||||| || ||||||||| ||| |||||||||||||||| ||| ||||| | | || |||||||||||||    
T  28804893 tagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacatttttt 28804978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 2887230 - 2887201
Alignment:
Q  123 gaccactatttagaagctgaaaaatgtggt 152  Q
    ||||||||||||||||||||||||||||||    
T  2887230 gaccactatttagaagctgaaaaatgtggt 2887201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 28805094 - 28805061
Alignment:
Q  121 gtgaccactatttagaagctgaaaaatgtggtca 154  Q
    |||| |||||||||||||||||||||||||||||    
T  28805094 gtgatcactatttagaagctgaaaaatgtggtca 28805061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 22608259 - 22608428
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    ||||||| |||| |||| |||||||||||||||| ||||||||||||||||  ||||||| ||||||| ||| ||||| | |||| ||| ||||||| ||    
T  22608259 gaataaaaattggtagatatccttaatgtgtacacccctttgtaccactctcaaaaattttagttaaccaaatatatggtctgtgtgactacatttt-tc 22608357  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactattttt 184  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  22608358 agttgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgtgcatgaccactattttt 22608428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 3222332 - 3222500
Alignment:
Q  18 ataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcag 116  Q
    ||||||||||||||||| |||||||||||||| |||||||||  |||||| |||||||||  |||| ||| ||||| | | || ||||||||||||||||    
T  3222332 ataaagattgatagacacccttaatgtgtaca-ccctttgtattactcttaaaaatttcaaataaccaaatatatggtgtctgtgaccacattttttcag 3222430  T
Q  117 ttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||| | ||||||||||| ||||| | |||||||||||  ||||||||||||||||    
T  3222431 ttgcgtgaccactatttaaatgctgaaaaatgcggtcacgcaactaaaatgtacgtgaccactatttttc 3222500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 23595055 - 23595191
Alignment:
Q  19 taaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagt 117  Q
    |||||||||  ||||| | |||||||||||| || |||||| |||||| |||||||| ||||||||||| ||||| | |||| ||||| ||||||| |||    
T  23595055 taaagattgggagacacctttaatgtgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtgaccatatttttttagt 23595154  T
Q  118 tgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    || ||||| ||||||||||||||||||||||||||||    
T  23595155 tgtgtgacaactatttagaagctgaaaaatgtggtca 23595191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 33815222 - 33815056
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    ||||||||||||   | |||| |||||||||||||| || |||||||||       ||| |||| ||||||||| ||||  | |||| ||||||||||||    
T  33815222 aagaataaagataagttgacacccttaatgtgtacacccttttgtacca-------aaacttcaattaactaaatatatagtctgtgtgaccacattttt 33815130  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||| |||||||    
T  33815129 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccaccatttttc 33815056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 10304870 - 10304741
Alignment:
Q  57 gtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcat 155  Q
    |||| ||||| |||||||| ||| ||||||| ||||| | |||| |||||||||||||||||||||||| |||||||||||||| |||||||  |||||     
T  10304870 gtactactctcgaaaattttagtgaactaaatatatggtctgtgtgaccacattttttcagttgcgtgatcactatttagaagcagaaaaatacggtcac 10304771  T
Q  156 g-aactaaaatgtgtgtgaccactattttt 184  Q
    | |||||||||| | |||||||||||||||    
T  10304770 gcaactaaaatgcgcgtgaccactattttt 10304741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 7706758 - 7706876
Alignment:
Q  17 aataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccaca-ttttttc 114  Q
    |||||||||||||| ||| | |||||||||||| || ||||||||| |||  ||||||| ||||||  ||| ||||| |||||| ||||||| |||||||    
T  7706758 aataaagattgataaacacctttaatgtgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgaccacatttttttc 7706857  T
Q  115 agttgcgtgaccactattt 133  Q
    |||||||||||||||||||    
T  7706858 agttgcgtgaccactattt 7706876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 9474553 - 9474697
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaa-tttcagttaactaaa-atatgatttgt--gagaccacattttttcagttgcgtgaccactatt 132  Q
    |||||||| |||| || ||||||||||||||||||| ||||||||| ||||  ||||||| | |  || ||||||||||||||||||||||||           
T  9474553 cttaatgtatacatccttttgtaccactcttgaaaaatttcagttagctaactatatgatctatatgacaccacattttttcagttgcgtgac------- 9474645  T
Q  133 tagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactattttt 184  Q
    |||||||| ||||||||||||| ||| ||||||| |||||||||||||||||    
T  9474646 tagaagctaaaaaatgtggtcacgaaataaaatgcgtgtgaccactattttt 9474697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 11108288 - 11108148
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    |||||||||||   |||||| |||||||||||| | |  ||||||  | |||  |||| |||| ||||| ||| |||||||||||| |||||||||||||    
T  11108288 agaataaagatcagtagacacccttaatgtgtatatctttttgtattattctaaaaaaattcaattaaccaaatatatgatttgtgtgaccacatttttt 11108189  T
Q  114 cagttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    |||||||||||||||| |  | |||||||||||||||||||    
T  11108188 cagttgcgtgaccactgtcaataagctgaaaaatgtggtca 11108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 9068599 - 9068503
Alignment:
Q  38 ttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||||||||| || |||||||||||||  ||||||| ||||||  ||| ||||| | |||| ||||||||||||| |||||||||||||||||||    
T  9068599 ttaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactattt 9068503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 138820 - 138755
Alignment:
Q  121 gtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |||| | ||||||||||||||    
T  138820 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttc 138755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 146841 - 146776
Alignment:
Q  121 gtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |||| | ||||||||||||||    
T  146841 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttc 146776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 2430513 - 2430618
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactct-tgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacc 126  Q
    |||||| ||||||||||||||  ||||||||||| |||   ||||||||||||||||||| ||||||| |||| |||||  |||||| |||||| |||||    
T  2430513 tagacacccttaatgtgtacattcctttgtaccattctgaaaaaatttcagttaactaaatatatgatctgtgtgacca-ttttttttagttgcatgacc 2430611  T
Q  127 actattt 133  Q
    |||||||    
T  2430612 actattt 2430618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 3620970 - 3620801
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||||||||| |  |||||||||||||| | |||||||| | | | |||||||||||||||  ||| || || | |||| ||  ||| |||| |    
T  3620970 gaataaagattgatagtcggccttaatgtgtacatcgctttgtactattttcgaaaatttcagttaatcaaatatgtggtctgtgcgaatacaatttt-c 3620872  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtca-tgaactaaaatgtgtgtgaccactattttt 184  Q
    | | |||||| ||||||||||||| ||||||||||| |||   ||||||||| | ||||||||||||||||    
T  3620871 aatcgcgtgatcactatttagaagttgaaaaatgtgatcacacaactaaaatatatgtgaccactattttt 3620801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 2430695 - 2430650
Alignment:
Q  88 atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||    
T  2430695 atatggtttgtgtgaccacattttttcagttgcgtgaccactattt 2430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 7915798 - 7915696
Alignment:
Q  27 gatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacattttttcagttgcgtgac 125  Q
    ||||||||| ||||||||||||| ||  || |||||||||  |||||||||||||| | || ||||  | |||| ||||||| ||||| |||||||||||    
T  7915798 gatagacattcttaatgtgtacaccctcttttaccactctgaaaaatttcagttaatcaaatatatcgtctgtgtgaccacaattttttagttgcgtgac 7915699  T
Q  126 cac 128  Q
    |||    
T  7915698 cac 7915696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 2835165 - 2835060
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| |||||||||||| | |  |||||||||||||  ||||||| ||||||| ||| |||  || |||| ||||||||||||| ||||| || ||||    
T  2835165 tagacagccttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatataccatctgtgtgaccacatttttttagttgtgtaacca 2835066  T
Q  128 ctattt 133  Q
    ||||||    
T  2835065 ctattt 2835060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 24386429 - 24386312
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||| ||||||| | | |||| |||||||||||||| |||||| |||||| ||  ||||||| ||||||| ||| ||||| | |||| |||||||| |||    
T  24386429 aagagtaaagataggttgacacccttaatgtgtacatccctttataccacgctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacatattt 24386330  T
Q  113 tcagttgcgtgaccacta 130  Q
    |  ||||||||| |||||    
T  24386329 tttgttgcgtgatcacta 24386312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 10304629 - 10304707
Alignment:
Q  51 ccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccact 129  Q
    ||||||||||||||||  ||||||||||||||| ||| ||||| | |||| ||||||| ||||| | |||||||||||||    
T  10304629 ccctttgtaccactctaaaaaatttcagttaaccaaatatatggtctgtgtgaccacacttttt-aattgcgtgaccact 10304707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 30056032 - 30056138
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccaca-ttttttcagttgcgtgacc 126  Q
    |||||| | ||||||| |||  |||||||||| |||||  ||||||||||||||| ||| ||||| | | || ||||||| ||||||  |||||||||||    
T  30056032 tagacacctttaatgtatactcccctttgtacaactctaaaaaatttcagttaaccaaatatatggtctatgtgaccacatttttttttgttgcgtgacc 30056131  T
Q  127 actattt 133  Q
    |||||||    
T  30056132 actattt 30056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 20084572 - 20084689
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    ||||| |||||| | | |||| |||||||||||||| |||||| |||||  ||  ||||||| ||||||| ||| ||||| | |||| |||||||| |||    
T  20084572 aagaagaaagataggttgacacccttaatgtgtacatccctttataccatgctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatattt 20084671  T
Q  113 tcagttgcgtgaccacta 130  Q
    |  ||||||||| |||||    
T  20084672 tatgttgcgtgatcacta 20084689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 9068411 - 9068443
Alignment:
Q  122 tgaccactatttagaagctgaaaaatgtggtca 154  Q
    ||||||||||||| |||||||||||||||||||    
T  9068411 tgaccactatttaaaagctgaaaaatgtggtca 9068443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 6e-42; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 43900424 - 43900598
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||||||||||||   |||||||||| | |  ||||||||||||| ||||||||||| |||||||| ||||| | |||| || |||||||||    
T  43900424 aagaataaagattgatagacacttttaatgtgtagatcattttgtaccactctcgaaaatttcaggtaactaaatatatggtctgtgtgatcacattttt 43900523  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttct 186  Q
    ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||   |||||||||||||||||    
T  43900524 tcagttgtgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttct 43900598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 30906262 - 30906091
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||| | || ||| | |||||||||||| || |||||||||||||  ||||||||||||||| ||| ||||| | || | ||||||  ||||||    
T  30906262 gaataaagatgggtacacacctttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtctgcgtgaccaccatttttc 30906163  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||| ||||||||||||||| | ||||||||||||||||| | |||||||||| | ||||||||||||||||    
T  30906162 agtttcgtgaccactatttaaatgctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttc 30906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 45305865 - 45306035
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||| |||  ||| ||||||| ||||||  |||||||||||||||  ||||||||||||||  ||| ||||  | |||  ||||| ||||||||    
T  45305865 gaataaagatagatttacacccttaatatgtacactcctttgtaccactctaaaaaatttcagttaatcaaatatatagtctgtatgaccatattttttc 45305964  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||| ||||| |||||||||||||||| || | |||||||||||| ||||||||||||||||    
T  45305965 agttgcgtgaccac-atttaaaagctgaaaaatgtggccacgcaactaaaatgtgcgtgaccactatttttc 45306035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 1400680 - 1400785
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| |||||||||||||| || ||||||||| |||  ||||||||||||||| ||| ||||| | |||| ||||||||||||| |||||||||||||    
T  1400680 tagacacccttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgacca 1400779  T
Q  128 ctattt 133  Q
    ||||||    
T  1400780 ctattt 1400785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 7378625 - 7378513
Alignment:
Q  69 aaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatg 166  Q
    ||||||||||||||| ||| ||||| |||||| ||||| |||||||||||||||| ||||| ||||||||||| |||||| |||| | | ||||||||||    
T  7378625 aaaatttcagttaacaaaatatatggtttgtgtgaccatattttttcagttgcgtaaccac-atttagaagct-aaaaatatggtgacgcaactaaaatg 7378528  T
Q  167 tgtgtgaccactatt 181  Q
    |||||||||||||||    
T  7378527 tgtgtgaccactatt 7378513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 28527445 - 28527363
Alignment:
Q  103 ccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||| |||||||||||||  |||||||||||| ||||||| |||| ||||||| ||| ||||||||||||||||||    
T  28527445 ccacatttttttagttgcgtgaccataatttagaagctggaaaatgttgtcacgaactaacatgcgtgtgaccactatttttc 28527363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 1400903 - 1400846
Alignment:
Q  96 tgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1400903 tgtgtgaccacattttt-cagttgcgtgaccactatttagaagctgaaaaatgtggtca 1400846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 28527230 - 28527334
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| ||||||| |||||| |||||||||||||| |  |||||||||| |||| ||| ||||| | |||| ||||||||||||| |||||||||||||    
T  28527230 tagacacccttaat-tgtacacccctttgtaccactttgaaaaatttcagctaaccaaatatatggtctgtgtgaccacatttttttagttgcgtgacca 28527328  T
Q  128 ctattt 133  Q
    ||||||    
T  28527329 ctattt 28527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 33667516 - 33667413
Alignment:
Q  31 gacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccact 129  Q
    |||| ||||||| ||||||  | |||||||||||||  ||||||| ||||||| ||| ||||| | |||  || |||||||||| |||||||||||||||    
T  33667516 gacacccttaatatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccact 33667417  T
Q  130 attt 133  Q
    ||||    
T  33667416 attt 33667413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 34175302 - 34175205
Alignment:
Q  38 ttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacattttttcagttgcgtgaccactattta 134  Q
    |||||||||||| || ||||||||| |||  ||||||| |||||| | || |||| ||||||| ||| ||||| ||| |||||||||| |||||||||    
T  34175302 ttaatgtgtacacccatttgtaccattctaaaaaatttaagttaatcaaatatataatttgtgtgacaacattgttttagttgcgtgatcactattta 34175205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 41212507 - 41212411
Alignment:
Q  31 gacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||| ||||||| |||| | ||||||||||||||||  ||||||| ||||||| ||| ||||| | |||| ||||||||||||| ||||| |||||||    
T  41212507 gacacccttaatatgtatacccctttgtaccactctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacatttttt-agttgtgtgacca 41212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 34175064 - 34175146
Alignment:
Q  38 ttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttg 119  Q
    |||||||||||| |||||||||  | |||  ||| ||||| ||||||||| |||||||||||| ||  |||||||||||||||    
T  34175064 ttaatgtgtacatccctttgtattattctgaaaattttcaattaactaaatatatgatttgtgtgattacattttttcagttg 34175146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 33667328 - 33667384
Alignment:
Q  130 atttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||| ||||||||||||||| | || ||||||||| || |||||||||||||    
T  33667328 atttagaagttgaaaaatgtggtcacgcaattaaaatgtgcgtaaccactatttttc 33667384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 44080153 - 44080325
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    ||||||||||| |||||| ||||||||||||||||   ||||||||||||||  | ||||||||||||| ||| |||| || |||| ||||| |||||||    
T  44080153 agaataaagatcgatagatatccttaatgtgtacatatctttgtaccactctgaacaatttcagttaaccaaatatataatctgtgtgaccatatttttt 44080252  T
Q  114 -cagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttttc 185  Q
     ||||||||||||||||||||||||| |||||||||||||||  |||||||||||| ||| ||||||||||||    
T  44080253 gcagttgcgtgaccactatttagaagttgaaaaatgtggtcacaaactaaaatgtgcgtgcccactatttttc 44080325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 3823547 - 3823720
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaa-aatatgatttgtgagaccacattttt 112  Q
    |||||||||||||  |||||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||  ||||| | |||| ||||||||||||    
T  3823547 aagaataaagattagtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgaccacattttt 3823646  T
Q  113 tcagttgcgtgaccactatttagaagctg--aaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttt 183  Q
    || ||||||||||||||||||| ||||||  |||||| |||||| | |||||||||| ||||||||||| ||||    
T  3823647 tctgttgcgtgaccactatttataagctgaaaaaaatatggtcacgcaactaaaatgcgtgtgaccactttttt 3823720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 11509804 - 11509969
Alignment:
Q  19 taaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagt 117  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||  |||| ||| ||  |||||||| ||||||||||||||| |    
T  11509804 taaagattgatagacacacttaatgtgtacacccctttgtaccactcttaaaaatttcaaataaccaaatatgcgatttgtgtgaccacattttttcact 11509903  T
Q  118 tgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactattt 182  Q
    |||||||||  |||||||||||||||||||||||||| | |||||||||| | |||||| ||||||    
T  11509904 tgcgtgacctttatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgacccctattt 11509969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 3785858 - 3786030
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaa-aatatgatttgtgagaccacattttt 112  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||   |||| | |||| ||||||||||||    
T  3785858 aagaataaagattggtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgaccacattttt 3785957  T
Q  113 tcagttgcgtgaccactatttagaagctg-aaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttt 183  Q
    || ||| ||||||||||||||| |||||| |||||| |||||| | |||||||||| | ||||||||| ||||    
T  3785958 tctgttacgtgaccactatttataagctgaaaaaatatggtcacgcaactaaaatgcgcgtgaccactttttt 3786030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 42638130 - 42637996
Alignment:
Q  53 ctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtgg 151  Q
    |||| ||| ||||| |||||||||||||||||||| ||||| | | |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42638130 ctttatacaactctcgaaaatttcagttaactaaatatatggtatatatgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtgg 42638031  T
Q  152 tcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||| | |||||||||| | || |||||||||||||    
T  42638030 tcacgcaactaaaatgcgcgtaaccactatttttc 42637996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 22432233 - 22432399
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacattttt 112  Q
    |||||||||||||| ||| |||||||||||||||||   | |||||  ||||| ||||||||||||||| | |||||||| |       |||| ||||||    
T  22432233 aagaataaagattggtaggcatccttaatgtgtacatatccttgtattactctcgaaaatttcagttaatcaaaaatatggt-------accatattttt 22432325  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtc-atgaactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||| |||||||||| |||||||||||||||||| || |||||||||| ||||| ||||||||||||    
T  22432326 tcagttgcgtgtccactatttaaaagctgaaaaatgtggtcaatcaactaaaatgcgtgtgtccactatttttc 22432399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 9710931 - 9710795
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||||| |||| | ||||||| |||||| ||||||||||||||||  ||||||||||||||| ||| ||||| ||     ||||| ||||||    
T  9710931 aagaataaagattggtagaaacccttaatatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatatggtt-----gaccatattttt 9710837  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    || ||||||||||||||| |||||||||||||| ||||||||    
T  9710836 tcggttgcgtgaccactacttagaagctgaaaactgtggtca 9710795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 19280098 - 19280265
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||| | |||||| |||||| ||||||| ||||||||||||||    || |||| ||||||| ||| ||||| | || | ||||||||||||||    
T  19280098 gaataaagatcggtagacacccttaaagtgtacacccctttgtaccactaa--aatattttagttaaccaaatatatggtctgagtgaccacattttttc 19280195  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttt 183  Q
    || |||||||||||| |||||||| ||||||||||||||| | |||||||||  | ||||||||||||||    
T  19280196 agatgcgtgaccactgtttagaagttgaaaaatgtggtcacgcaactaaaattcgcgtgaccactatttt 19280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 1705880 - 1705710
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    |||||||| || |||  ||| |||||||||||||| || | |||| || | |  ||||||||||||||| ||| | ||||| |||| || || ||||||     
T  1705880 agaataaaaatagattaacacccttaatgtgtacatccttgtgtatcattgtaaaaaatttcagttaaccaaatacatgatatgtgtgatcatattttt- 1705782  T
Q  114 cagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
     ||||||||||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||    
T  1705781 -agttgcgtgaccactatttagaagctgaaaaatatggtcatgcaactaaaatgcgcgtgaccactatttttc 1705710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 31545603 - 31545686
Alignment:
Q  104 cacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtca-tgaactaaaatgtgtgtgaccactatttttct 186  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||   ||||||||||||  ||||||||||||||||    
T  31545603 cacattttttcagttgagtaaccactatttagaagctgaaaaatgtggtcacacaactaaaatgtgcatgaccactatttttct 31545686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 4169214 - 4169145
Alignment:
Q  117 ttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||    
T  4169214 ttgcgtgaccactatttagaagctgaaaaatgtggtaacgcaactaaaatgtgcgtgaccactatttttc 4169145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 5341833 - 5341945
Alignment:
Q  75 tcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcat-gaactaaaatgtgtgtg 172  Q
    |||||||| |||| ||||| |||||| ||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||  |||||||||   | ||    
T  5341833 tcagttaattaaatatatggtttgtgtgaccatatttttttagctgcgtgaccactatttagaagttgaaaaatgtggtcatacaactaaaatacatatg 5341932  T
Q  173 accactatttttc 185  Q
    |||||||||||||    
T  5341933 accactatttttc 5341945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 27040799 - 27040683
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    ||||||||||| | | ||||  || ||||||||||  ||||||||| ||||| ||||||||| |||||| ||| ||||||| |||| || |||| |||||    
T  27040799 agaataaagataggttgacactctcaatgtgtacattcctttgtactactctagaaaatttcggttaaccaaatatatgatctgtgtgatcacaattttt 27040700  T
Q  114 cagttgcgtgaccacta 130  Q
    |||||||||||||||||    
T  27040699 cagttgcgtgaccacta 27040683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 27335303 - 27335406
Alignment:
Q  32 acatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaa-aatatgatttgtgagaccacattttttcagttgcgtgaccacta 130  Q
    ||||| |||||||||||| |||||||||||| |||  ||| ||| ||||||| || |||||| | |||| ||||||||||||| ||||||||||| ||||    
T  27335303 acatctttaatgtgtacacccctttgtaccattctgaaaattttgagttaaccaataatatggtatgtgtgaccacatttttttagttgcgtgacaacta 27335402  T
Q  131 ttta 134  Q
    ||||    
T  27335403 ttta 27335406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 26308824 - 26308680
Alignment:
Q  43 gtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctg 141  Q
    ||||||| | |||||||  |||||  ||| ||||||||||  ||| ||||| |||||| | |||||||||| || ||  | |||||||||||||||||||    
T  26308824 gtgtacacctctttgtataactctgaaaattttcagttaatcaaatatatggtttgtgtggccacatttttccaattctgggaccactatttagaagctg 26308725  T
Q  142 aaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    || |||||||||| | || ||||||| | ||||||||||||||||    
T  26308724 aataatgtggtcacgcaattaaaatgcgcgtgaccactatttttc 26308680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 23163242 - 23163366
Alignment:
Q  31 gacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacattttt--tcagttgcgtgacca 127  Q
    ||||||||| ||||||| | |||||||||||||||| |||||| |||||||| |||| ||||| | | || ||| ||||||||  |||||||| ||||||    
T  23163242 gacatccttgatgtgtata-ccctttgtaccactctcgaaaatatcagttaatctaatatatggtctatgtgactacattttttatcagttgcatgacca 23163340  T
Q  128 ctatttagaagctgaaaaatgtggtca 154  Q
    |||| ||| ||||||||||| ||||||    
T  23163341 ctatgtag-agctgaaaaatatggtca 23163366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 31545423 - 31545490
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa 82  Q
    ||||||||||||| |||||| | |||||||||| | |||||||||| ||||| |||||||||||||||    
T  31545423 agaataaagattggtagacacctttaatgtgtatatccctttgtactactctcgaaaatttcagttaa 31545490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 41571828 - 41571876
Alignment:
Q  102 accacattttttcagttgcgtgaccactatttagaagctgaaaaatgtg 150  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||||    
T  41571828 accacattttttcagttacgtgaccactatttaaaagttgaaaaatgtg 41571876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 5342079 - 5341988
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacattttttcagttg 119  Q
    ||||||||| ||||| ||||| |||||||||| |||||  |||||||||||||| | || ||||| | |||| ||||||||||||| |||||    
T  5342079 tagacatccctaatgcgtacacccctttgtacgactctgaaaaatttcagttaatcgaatatatggtctgtgtgaccacatttttttagttg 5341988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 18733677 - 18733572
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| | |||||||||||| |||||| ||||| |||  ||||||| ||||||||||| ||||| | || | |||||||||| || ||||||||||| |    
T  18733677 tagacacctttaatgtgtacacccctttataccattctgaaaaatttaagttaactaaatatatggtatgggtgaccacatttctt-agttgcgtgacaa 18733579  T
Q  128 ctattta 134  Q
    |||||||    
T  18733578 ctattta 18733572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 11501465 - 11501368
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||||||||||  ||||| ||||||| | |||||||| ||||||| ||| ||||||| |||| |||| || ||||| |||||||| | ||||||||    
T  11501465 cttaatgtgtacactcctttataccactttagaaaatttaagttaaccaaatatatgatctgtgtgaccgcagttttttagttgcgttagcactattt 11501368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 19280400 - 19280298
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| |||||||||||||| || |||||||||||||  ||| ||| |||||| | || ||||| | |||| ||| ||||||||| ||| | |||||||    
T  19280400 tagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtctgtgtgacaacattttttaagtggtgtgacca 19280301  T
Q  128 cta 130  Q
    |||    
T  19280300 cta 19280298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 27326282 - 27326164
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||| ||||| || |||  ||||||||||||| |||||| ||||| | | | ||| |||| ||||  ||| ||||| |||||  ||||||||||||||    
T  27326282 gaataatgattggtaaacactcttaatgtgtacacccctttctaccattttaggaaacttcaattaatcaaatatatggtttgtctgaccacattttttc 27326183  T
Q  115 agttgcgtgaccactattt 133  Q
     ||||||||| ||||||||    
T  27326182 ggttgcgtgatcactattt 27326164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 27332519 - 27332401
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||| ||||| || |||  ||||||||||||| |||||| ||||| | | | ||| |||| ||||  ||| ||||| |||||  ||||||||||||||    
T  27332519 gaataatgattggtaaacactcttaatgtgtacacccctttctaccattttaggaaacttcaattaatcaaatatatggtttgtctgaccacattttttc 27332420  T
Q  115 agttgcgtgaccactattt 133  Q
     ||||||||| ||||||||    
T  27332419 ggttgcgtgatcactattt 27332401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 42481300 - 42481370
Alignment:
Q  117 ttgcgtgaccactatttagaagctgaaaaatgtggtca-tgaactaaaatgtgtgtgaccactatttttct 186  Q
    |||||||||||||||||| || ||||||||| ||||||   |||||||||||  ||||||| |||||||||    
T  42481300 ttgcgtgaccactatttaaaaactgaaaaatatggtcacacaactaaaatgtacgtgaccattatttttct 42481370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 39126328 - 39126263
Alignment:
Q  69 aaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||||| ||||||| ||| ||||||| |||| ||| ||||||||| ||||||||||| |||||||    
T  39126328 aaaatttaagttaaccaaatatatgatctgtgtgacaacatttttttagttgcgtgactactattt 39126263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 4169305 - 4169236
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa 87  Q
    |||||||||||||||| || | ||||| |||||  || ||||||||  ||| ||||||||||||||||||||    
T  4169305 gaataaagattgatagtcaactttaatatgtac--ccttttgtacctatctcgaaaatttcagttaactaaa 4169236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 11510138 - 11510032
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccaca--ttttttcagttgcgtgac 125  Q
    |||||||||||||||||||  | |||||||||  ||||  |||||||||||||| |||| |||| || |||| ||||| |  |||||| ||||||||||     
T  11510138 tagacatccttaatgtgta-tatcctttgtacacctctgaaaaatttcagttaaataaatatataatatgtgtgaccatatttttttttagttgcgtgag 11510040  T
Q  126 cactattt 133  Q
    ||||||||    
T  11510039 cactattt 11510032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 31545794 - 31545714
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaac-taaaatatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||| ||||||  |||||||||| |||| ||| ||||| | | || ||||||||||||| ||||| |||||||||||||    
T  31545794 tttgtatcactctgaaaaatttcaggtaacctaatatatggtctatgtgaccacatttttttagttgtgtgaccactattt 31545714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 75; Significance: 9e-35; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 423 - 249
Alignment:
Q  13 gaagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttt 111  Q
    |||||| ||| |||| || ||| ||||||| |||||| | ||||||||||||||  ||| ||||||||||| ||| ||||| | |||| | ||||| |||    
T  423 gaagaacaaaaattggtaaacacccttaatttgtacatctctttgtaccactctgaaaattttcagttaaccaaatatatggtctgtgtggccacacttt 324  T
Q  112 ttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |  |||||||||||||||    
T  323 ttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcatgaccactatttttc 249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 114 - 217
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttg-aaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacc 126  Q
    |||||||| ||||||||||||    ||||||||||||||| ||||||||||||||| ||| |||||   |||| || |||||| ||| ||||||||||||    
T  114 tagacatctttaatgtgtacatttttttgtaccactcttgaaaaatttcagttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgacc 213  T
Q  127 acta 130  Q
    ||||    
T  214 acta 217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 22169361 - 22169526
Alignment:
Q  22 agattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgc 120  Q
    |||||| |||||| |||||||||||||| ||  ||||| || | |||||||||||||||||||||| |||||   | || || |||||||||||||||||    
T  22169361 agattggtagacacccttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatatggaatatgtgatcacattttttcagttgc 22169460  T
Q  121 gtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||| ||| ||||||||||||||| | |||||||||| | ||||||||||||||||    
T  22169461 gtgaccactatttataagttgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttc 22169526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 35922718 - 35922801
Alignment:
Q  103 ccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || |||||||||||||||    
T  35922718 ccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgtatgaccactatttttc 35922801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 31189473 - 31189645
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttt-- 111  Q
    |||||||||||||  ||||| | ||||| ||||||||  ||||||||||||| |||||||||||||||| ||| ||||  | |||| |||||||||||      
T  31189473 agaataaagattggcagacacctttaatatgtacaacattttgtaccactctcgaaaatttcagttaaccaaatatatagtatgtgtgaccacatttttg 31189572  T
Q  112 ttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttt 183  Q
    | || |||| |||  |||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||    
T  31189573 tccaattgcatgattactatttagaagctgaaaaatgtgatcacgcaactaaaatgtttgtgaccactatttt 31189645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 36169545 - 36169405
Alignment:
Q  14 aagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttt 112  Q
    |||||||||||||| |||||||| ||||||| |||| |  |||  ||||||||  |||||||||| | |  ||| ||||| | |||| ||||||||| ||    
T  36169545 aagaataaagattgctagacatctttaatgtatacatct-tttacaccactctcaaaaatttcagctgatcaaatatatggtatgtgtgaccacattctt 36169447  T
Q  113 tcagttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  36169446 tcagttgcgtgaccactatttagaagctgaaaaatatggtca 36169405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 38522092 - 38522009
Alignment:
Q  101 gaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactattttt 184  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |   ||||||| | |||||||||||||||    
T  38522092 gaccacattttttcaattgcatgaccactatttagaagctgaaaaatgtggtcacgcgataaaatgcgcgtgaccactattttt 38522009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 13312498 - 13312667
Alignment:
Q  17 aataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttca 115  Q
    ||||||||||| |||| | | |||||||||||| || ||||||| | | | |||||||||| ||||| ||| ||||| | | || || |||||||| |||    
T  13312498 aataaagattggtagatacctttaatgtgtacacccttttgtactattttcgaaaatttcaattaaccaaatatatggtctatgtgaacacatttt-tca 13312596  T
Q  116 gttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||| |||||| ||||||||||||||||||||||||||| | |||||||||| | ||| | ||||||||||    
T  13312597 gttgggtgaccgctatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtggcaactatttttc 13312667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 33959189 - 33959020
Alignment:
Q  17 aataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttca 115  Q
    ||||||||||  |||||| |||||||||||| |  ||||| ||||| ||| ||||| |||||||||| ||| |||| || | || ||  |||||||||||    
T  33959189 aataaagattagtagacacccttaatgtgtatattcctttataccattctcgaaaacttcagttaacaaaatatat-atctatgtgattacattttttca 33959091  T
Q  116 gttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    | |||||||||||||||||||| ||||||||| |||||| | |||||||||  | || |||||||||||||    
T  33959090 gctgcgtgaccactatttagaaactgaaaaatatggtcacgcaactaaaatccgagtaaccactatttttc 33959020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 43461912 - 43461780
Alignment:
Q  15 agaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt 113  Q
    ||||||||||| | ||||||  ||||||||||  | ||||||||| |||| |||||||||||||||||  ||| ||||| | | || ||||| |||||||    
T  43461912 agaataaagataggtagacactcttaatgtgtgtacccctttgtagcacttttgaaaatttcagttaatcaaatatatggtctttg-gaccatatttttt 43461814  T
Q  114 cagttgcgtgaccactatttagaagctgaaaaat 147  Q
    |||||| |||||||||||||||||| ||||||||    
T  43461813 cagttgtgtgaccactatttagaagttgaaaaat 43461780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 13312776 - 13312696
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||||||||||  ||||||||||||||| | | |||||||||||| ||||||||||||| |||||||||||||||||||    
T  13312776 tttgtaccactctgaaaaatttcagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgaccactattt 13312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 15221758 - 15221662
Alignment:
Q  38 ttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||||||||||  |||||||| || |||  ||||||||||||||||||| ||||| | |||| ||||||||||||| | ||| |||||||||||||    
T  15221758 ttaatgtgtacactcctttgtatcattctgaaaaatttcagttaactaaatatatggtctgtgtgaccacatttttttaattgtgtgaccactattt 15221662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 42034735 - 42034825
Alignment:
Q  94 tttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    |||||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||| | ||||||||||   ||||||||||||||||    
T  42034735 tttgtgtgaccacattttt-cagttgcgtgactcctatt-agaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttc 42034825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 19621656 - 19621565
Alignment:
Q  43 gtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||||  ||||||||||| |||  ||||||||||||||| ||| ||||| | |||| |||||||||||| || |||||||||||||||||    
T  19621656 gtgtacactcctttgtaccattctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacatttttccatttgcgtgaccactattt 19621565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 22169652 - 22169555
Alignment:
Q  36 ccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaaat-atgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||||| |||||| ||||||||||||||||  ||| ||| ||||||| ||| | ||||| |||| ||||||||||||| ||||||||||||| |||||    
T  22169652 ccttaatctgtaca-ccctttgtaccactctgaaaatttttagttaaccaaatttatgatatgtgtgaccacatttttttagttgcgtgaccattattt 22169555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 42034959 - 42034857
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagtt-aactaaaatatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||||| |||||| ||||| ||||||||||||||||  |||||||||||| | | || ||||| | ||||  | |||||||||| |||||||||||||    
T  42034959 tagacatctttaatgcgtacatccctttgtaccactctaaaaaatttcagttgatcaaatatatggtatgtgtaatcacatttttttagttgcgtgacca 42034860  T
Q  128 cta 130  Q
    |||    
T  42034859 cta 42034857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 43262911 - 43262793
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    ||||||||||   |||||| |||||||||||||| |||||||||| ||| |  ||||||||||||||| ||| ||||| | |||| |||||||||| ||     
T  43262911 gaataaagataagtagacacccttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacatttgttt 43262812  T
Q  115 agttgcgtgaccactattt 133  Q
    ||||  ||||| |||||||    
T  43262811 agttatgtgactactattt 43262793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 35922607 - 35922704
Alignment:
Q  17 aataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacatttttt 113  Q
    ||||||||| | ||||||  ||||||||||||| ||||||||| ||||||  |||||||||||||| | || ||||| | |||| |||||||||||||    
T  35922607 aataaagatcggtagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatatggtatgtgtgaccacatttttt 35922704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 16095533 - 16095578
Alignment:
Q  38 ttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaac 83  Q
    |||||||||||| |||||| ||||||||| |||||||||| |||||    
T  16095533 ttaatgtgtacacccctttctaccactctcgaaaatttcaattaac 16095578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 35922927 - 35922830
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaaat-atgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||||||||||| | ||||||| |||| |  ||||||| ||||||| ||| | ||| | |||| ||||| ||||||| |||||| ||||||||||||    
T  35922927 cttaatgtgtacaccgctttgtatcactttgaaaaatttaagttaaccaaatttatggtctgtgggaccatattttttaagttgcatgaccactattt 35922830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 7156000 - 7156096
Alignment:
Q  38 ttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaa-ctaaaatatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    |||||||||||| |  ||||||||||| | ||||||||||||||| | || ||||| ||| |  || |||||||||||||||   ||||||||||||    
T  7156000 ttaatgtgtacatctttttgtaccactttagaaaatttcagttaatcaaatatatggtttatatgatcacattttttcagttatatgaccactattt 7156096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 21694 - 21552
Alignment:
Q  11 gagaagaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatt 109  Q
    ||||||||||||||||| |||||| | ||||||||||||  | ||||| ||||| | |||||| |||||||||  || ||||| | |||| |||||||||    
T  21694 gagaagaataaagattggtagacacctttaatgtgtaca--cgtttgtgccactttagaaaatctcagttaaccgaatatatggtctgtgtgaccacatt 21597  T
Q  110 ttttcagttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  21596 ttttcagttgcgtgaccactatatagaagctgaaaaatgtggtca 21552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 34490094 - 34490257
Alignment:
Q  23 gattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcg 121  Q
    ||||| |||||| |||||||||||| | |  || |||||||| |  ||||||||||||||||||| ||||| | |||| ||| |||||||||||||||      
T  34490094 gattggtagacacccttaatgtgtatatcttttggtaccactatgtaaaatttcagttaactaaatatatggtctgtgtgac-acattttttcagttgta 34490192  T
Q  122 tgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttttct 186  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||| |  ||||||||||||||||    
T  34490193 tgaccactatttagaagctaaaaaatgtggtcatgcaataaaatgcgcatgaccactatttttct 34490257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 29677202 - 29677125
Alignment:
Q  109 tttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  29677202 tttttcagttgagtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgtgcgtgaccactatttttc 29677125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 25238467 - 25238545
Alignment:
Q  107 attttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||| || |||||||||||||    
T  25238467 attttttcagttgcgtgaccactatttagaagctaaaaaatgtggtcacgtaataaaatgtgcgtaaccactatttttc 25238545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 13350894 - 13350999
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||| ||||| | |||| || ||| ||||||||||||| || | |    
T  13350894 tagacatccttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggtatgtgtgatcacgttttttcagttgcatggcta 13350993  T
Q  128 ctattt 133  Q
    ||||||    
T  13350994 ctattt 13350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 29167931 - 29167850
Alignment:
Q  104 cacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttttc 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||| | | ||||||| |  |||||||||||||||    
T  29167931 cacattttttcagttgcgtgaccactatttagaagctaaaaaatatggtcacgcaataaaatgcgcatgaccactatttttc 29167850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 34490383 - 34490289
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccacta 130  Q
    ||||||||||||| | ||||||||||||||  |||||||||||| || ||| ||||| | |||| ||||||||||||| ||||||||||||||||    
T  34490383 cttaatgtgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttgcgtgaccacta 34490289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 38951840 - 38951977
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacatttttt-cagttgcgtgaccactatttagaagctgaaaaa--tgt 149  Q
    ||||||||||||| |||||||| ||||||| ||| ||||| | | ||| |||||||||||| ||| |||||||||||||||||||| ||||||||  | |    
T  38951840 tttgtaccactctcgaaaatttaagttaaccaaatatatggtctatgaaaccacatttttttcagctgcgtgaccactatttagaaactgaaaaaaatat 38951939  T
Q  150 ggtcatg-aactaaaatgtgtgtgaccactatttttct 186  Q
     |||| | |||||||||| || ||||||||||||||||    
T  38951940 agtcacgcaactaaaatgcgtctgaccactatttttct 38951977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 42604197 - 42604287
Alignment:
Q  96 tgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcat-gaactaaaatgtgtgtgaccactatttttc 185  Q
    |||| |||||||||||||||||||| | ||||||||||||||||| |||| | |||||||  |||||||||| | ||||||||||||||||    
T  42604197 tgtgtgaccacattttttcagttgcatcaccactatttagaagcttaaaagtatggtcatacaactaaaatgcgcgtgaccactatttttc 42604287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 34364169 - 34364268
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggt 152  Q
    ||||||||||||| |||||||| ||||||||||| ||||| | |||| ||||| | ||||||||||||||| ||| |||||||||||||||| |||||||    
T  34364169 tttgtaccactctggaaaatttaagttaactaaatatatggtctgtgtgaccata-tttttcagttgcgtggcca-tatttagaagctgaaacatgtggt 34364266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 2570102 - 2570006
Alignment:
Q  37 cttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||||||||||| ||||||||||| |||| |||||||| ||||||| ||  ||||| ||||||  |||| ||||||| |||||||||||||||||||    
T  2570102 cttaatgtgtaca-ccctttgtaccgctctggaaaatttaagttaaccaagtatatggtttgtgttaccatattttttgagttgcgtgaccactattt 2570006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 517623 - 517492
Alignment:
Q  19 taaagattgatagacatccttaatgtgtacaaccctt---tgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    ||||||| ||||||||||||||||||||||| |  ||   |||| ||||||  ||||||| ||||||| ||| ||||||| ||||  ||||||||||| |    
T  517623 taaagatcgatagacatccttaatgtgtacatcatttatttgtatcactctcaaaaatttaagttaaccaaatatatgatatgtgcaaccacattttt-c 517525  T
Q  115 agttgcgtgaccactatttagaagctgaaaaat 147  Q
    | |||||| ||||||||||||||| | ||||||    
T  517524 aattgcgtaaccactatttagaagttaaaaaat 517492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 34941712 - 34941762
Alignment:
Q  30 agacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagtt 80  Q
    |||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  34941712 agacatccttaatgtgtacatccctttgtaccactctgaaaaatttcagtt 34941762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 5831726 - 5831633
Alignment:
Q  38 ttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccacta 130  Q
    |||| ||||||| ||||||||| ||||||  ||||||||| ||||| ||| ||||| | |||| ||||| ||||||| ||||||||||||||||    
T  5831726 ttaacgtgtacacccctttgtatcactctgaaaaatttcaattaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccacta 5831633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 9929935 - 9929870
Alignment:
Q  69 aaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattt 133  Q
    ||||||||| ||||||||| ||||| | |||| ||||||||||||||| |||||||||||||||||    
T  9929935 aaaatttcaattaactaaatatatggtctgtgtgaccacattttttcatttgcgtgaccactattt 9929870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 5831431 - 5831601
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||||||||| |||||| | |||||| ||||| || |||||| || |||  ||||||| ||||||||||| ||||| | |||| || || ||||| |     
T  5831431 gaataaagattggtagaca-ctttaatgagtacacccttttgtaacattctgaaaaattttagttaactaaagatatggtatgtgtgatcatattttgtt 5831529  T
Q  115 agttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtgtgaccactatttttc 185  Q
     ||||| ||||||||||||||||| | |||||| |||||  | |||||||||| || | ||||| |||||||    
T  5831530 tgttgcatgaccactatttagaagttaaaaaatatggtcccgtaactaaaatgcgtattaccacaatttttc 5831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 29167757 - 29167818
Alignment:
Q  69 aaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccacta 130  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||| |||||| |||||||||    
T  29167757 aaaatttcagttaactaaatatatggtttgtgtgaccacatttttt-agttgcctgaccacta 29167818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 5855282 - 5855201
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactattta 134  Q
    |||||||||||||  ||||||| ||||||| ||| ||||| | |||| ||||||||||  | ||||||||||||||||||||    
T  5855282 tttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttagttagttgcgtgaccactattta 5855201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 184
Target Start/End: Original strand, 9468064 - 9468176
Alignment:
Q  73 tttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgtg 170  Q
    ||||||||||| ||| ||||| | |||| ||||| |||||||||||||  |||||| |||||| |||||| |||||||| |||   ||||||||||| ||    
T  9468064 tttcagttaaccaaatatatggtatgtgtgaccatattttttcagttgtctgacca-tatttaaaagctgtaaaatgtgatcacacaactaaaatgtatg 9468162  T
Q  171 tgaccactattttt 184  Q
    |||| |||||||||    
T  9468163 tgactactattttt 9468176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 9929662 - 9929735
Alignment:
Q  54 tttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacc 126  Q
    |||||||||||||||||||||| ||||||| ||| ||||| |||||  ||||||||| ||| ||||||| ||||    
T  9929662 tttgtaccactcttgaaaatttaagttaaccaaatatatggtttgtatgaccacattattttagttgcgcgacc 9929735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 38244836 - 38244801
Alignment:
Q  96 tgtgagaccacattttttcagttgcgtgaccactat 131  Q
    |||| |||||||||||||||||||||||||||||||    
T  38244836 tgtgtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 38952112 - 38952005
Alignment:
Q  27 gatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgac 125  Q
    |||||||| |||||| || |||| | ||||||| ||||||  ||||||||||||||| |||  |||| | | || ||||| ||||||| |||||| ||||    
T  38952112 gatagacaaccttaaagtatacacctctttgtatcactctgaaaaatttcagttaacaaaatgtatggtatatgtgaccatatttttttagttgcttgac 38952013  T
Q  126 cactattt 133  Q
    ||||||||    
T  38952012 cactattt 38952005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 13351088 - 13351042
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaattt 75  Q
    |||||||| |||||||||||| ||||||||||||||||  |||||||    
T  13351088 tagacatctttaatgtgtacacccctttgtaccactctgaaaaattt 13351042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 29676992 - 29677096
Alignment:
Q  29 tagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttcagttgcgtgacca 127  Q
    |||||| | |||||||||||  ||||||||| |||| |  ||||||| ||||||| ||| |||||   |||| ||||||||||||| |||||| ||||||    
T  29676992 tagacacctttaatgtgtacgtccctttgtagcactttgaaaaattttagttaaccaaatatatggcctgtgtgaccacatttttt-agttgcatgacca 29677090  T
Q  128 ctattt 133  Q
    ||||||    
T  29677091 ctattt 29677096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 24141 - 24061
Alignment:
Q  105 acattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgaactaaaatgtgtgtgaccactatttttc 185  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| | | | ||||||| | ||||||||||||||||    
T  24141 acattttttcagttgcatgaccactatttagaagctaaaaaatgtggttacgcattaaaatgcgcgtgaccactatttttc 24061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 10825 - 10687
Alignment:
Q  17 aataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttca 115  Q
    ||||||||| | || ||||||||||| ||||||  ||||||||||||||| |||||||||| ||||| ||| ||||| | |  | ||| | ||||||| |    
T  10825 aataaagataggtaaacatccttaatatgtacattcctttgtaccactctagaaaatttcaattaaccaaatatatggtctaggtgactatattttttaa 10726  T
Q  116 gttgcgtgaccactatttagaagctgaaaaatgtggtca 154  Q
    ||||| ||||||||||||| ||  | |||||||||||||    
T  10725 gttgcatgaccactatttaaaaaataaaaaatgtggtca 10687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 86873 - 86991
Alignment:
Q  16 gaataaagattgatagacatccttaatgtgtacaaccctttgtaccactcttgaaaatttcagttaactaaa-atatgatttgtgagaccacattttttc 114  Q
    |||||| ||||| || |||| ||||||||||||| |||||| ||||| ||| ||||| |||| ||||  ||| ||||  |||||| ||||||||||||||    
T  86873 gaataatgattggtaaacattcttaatgtgtacacccctttctaccattctagaaaacttcaattaatcaaatatatagtttgtgtgaccacattttttc 86972  T
Q  115 agttgcgtgaccactattt 133  Q
     |||| |||||||||||||    
T  86973 ggttgtgtgaccactattt 86991  T

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