View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_high_11 (Length: 375)
Name: NF4097_high_11
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 28132753 - 28132407
Alignment:
| Q |
18 |
agttcagagaaattcatgtatagtgtgttcgttgatctattgaagctcttgttttaagatttccccttttcaagtttgcttcttgctgacaaattttatt |
117 |
Q |
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| T |
28132753 |
agttcagagaaattcatgtatagtgtgttcgttgatctattgaagctcttgttttaagatttccccttttcaagtttaattcttgctgacaaattttatt |
28132654 |
T |
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| Q |
118 |
ttgtacccattgaaattatagcttcttagagaagctgacgcttccatcctggagataacaaaggtgaatctggtctcctttgtgtatgtcccagttcagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28132653 |
ttgtacccattgaaattatagcttcttagagaagctgacgcttccatcctggagataacaaaggtgaatctggtctcctttgtgtatgtcccagttcagg |
28132554 |
T |
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| Q |
218 |
taagttgcttgaaatcaacatacagcacctttgcatctaaattatttgcatcttagtgttcactagaccttgggaacttgggcttatttgtatcgtattt |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28132553 |
taagttgcttgaaatcaacatacagcagctttgcatctaaattatttgtatcttagtgttcactagaccttgggaacttgggcttatttgtatcgtattt |
28132454 |
T |
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| Q |
318 |
gtatctggcctccccttgtttgcttctactgaatgattccttatcat |
364 |
Q |
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| T |
28132453 |
gtatctggcctccccctgtttgcttctactgaatgattccttatcat |
28132407 |
T |
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