View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_high_12 (Length: 346)

Name: NF4097_high_12
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_high_12
NF4097_high_12
[»] chr3 (5 HSPs)
chr3 (52-339)||(33990700-33990987)
chr3 (268-298)||(1116401-1116431)
chr3 (265-302)||(4216083-4216120)
chr3 (267-320)||(35335587-35335640)
chr3 (262-298)||(2452426-2452462)
[»] chr4 (2 HSPs)
chr4 (282-324)||(7367535-7367577)
chr4 (271-319)||(43843634-43843682)
[»] chr5 (2 HSPs)
chr5 (264-300)||(6760514-6760550)
chr5 (285-333)||(9897920-9897968)
[»] chr1 (2 HSPs)
chr1 (264-324)||(3523373-3523433)
chr1 (271-313)||(52156777-52156819)
[»] chr7 (2 HSPs)
chr7 (281-336)||(41775203-41775258)
chr7 (264-302)||(438696-438734)
[»] chr8 (2 HSPs)
chr8 (282-336)||(14227192-14227246)
chr8 (264-324)||(11556961-11557021)
[»] chr6 (4 HSPs)
chr6 (266-299)||(4323114-4323147)
chr6 (272-309)||(32926315-32926352)
chr6 (264-300)||(29236264-29236300)
chr6 (265-301)||(32921007-32921043)
[»] chr2 (1 HSPs)
chr2 (262-298)||(15804118-15804154)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 52 - 339
Target Start/End: Complemental strand, 33990987 - 33990700
Alignment:
Q  52 taagccaccactataagccagaacaaccttattcagtttaccttttagtccagcaaccttcttggtctcagaaatttcaacgtctttatatagcacagct 151  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33990987 taagccaccactataagccagaacaaccttattcaatttaccttttagtccagcaaccttcttggtctcagaaatttctacgtctttatatagcacagct 33990888  T
Q  152 tttataactgcatttcaataaaacttcactgttagagacattaaacttaaaactcaattatcagataacactgaacatatctggattctggtgtatgaca 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990887 tttataactgcatttcaataaaacttcactgttagagacattaaacttaaaactcaattatcagataacactgaacatatctggattctggtgtatgaca 33990788  T
Q  252 ctgaccaatggtttacatttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtctgtgctg 339  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33990787 ctgacccatggtttacatttaagcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtatgtgctg 33990700  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 298
Target Start/End: Complemental strand, 1116431 - 1116401
Alignment:
Q  268 atttaatcacttcaattttctcaaattatta 298  Q
    |||||||||||||||||||||||||||||||    
T  1116431 atttaatcacttcaattttctcaaattatta 1116401  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 4216083 - 4216120
Alignment:
Q  265 tacatttaatcacttcaattttctcaaattattattgg 302  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  4216083 tacatttaatcacttcaattttctttaattattattgg 4216120  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 35335640 - 35335587
Alignment:
Q  267 catttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtc 320  Q
    |||||||||||||  ||||||||||||||||| | | |||||||||| ||||||    
T  35335640 catttaatcactttcattttctcaaattattactagtgtctatgtgtcagtgtc 35335587  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 2452462 - 2452426
Alignment:
Q  262 gtttacatttaatcacttcaattttctcaaattatta 298  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  2452462 gtttacattgaatcacttcaattttctgaaattatta 2452426  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 7367577 - 7367535
Alignment:
Q  282 attttctcaaattattattggcgtctatgtgttagtgtcgtgt 324  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367577 attttctcaaattattattggtgtctatgtgttagtgtcgtgt 7367535  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 43843634 - 43843682
Alignment:
Q  271 taatcacttcaattttctcaaattattattggcgtctatgtgttagtgt 319  Q
    |||||||||  ||||||||||||||||||||| ||||| ||||||||||    
T  43843634 taatcacttttattttctcaaattattattggtgtctacgtgttagtgt 43843682  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 6760514 - 6760550
Alignment:
Q  264 ttacatttaatcacttcaattttctcaaattattatt 300  Q
    |||||||||||||||| ||||||||||||||||||||    
T  6760514 ttacatttaatcacttaaattttctcaaattattatt 6760550  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 9897920 - 9897968
Alignment:
Q  285 ttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtct 333  Q
    |||||||||||||||||| ||| |||||| |||| ||||||| ||||||    
T  9897920 ttctcaaattattattggtgtcgatgtgtgagtgccgtgtccggtgtct 9897968  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 3523433 - 3523373
Alignment:
Q  264 ttacatttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgt 324  Q
    ||||||| ||||||||| ||||| |||||||||||| || ||||| |||| ||||||||||    
T  3523433 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 3523373  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 52156777 - 52156819
Alignment:
Q  271 taatcacttcaattttctcaaattattattggcgtctatgtgt 313  Q
    |||||||||| |||||||||| |||||||| ||||||||||||    
T  52156777 taatcacttccattttctcaagttattattagcgtctatgtgt 52156819  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 41775258 - 41775203
Alignment:
Q  281 aattttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtctgtg 336  Q
    ||||||||||||||||||| || | | |||| |||||||||||||| |||||||||    
T  41775258 aattttctcaaattattatcggtggccatgtcttagtgtcgtgtccggtgtctgtg 41775203  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 438696 - 438734
Alignment:
Q  264 ttacatttaatcacttcaattttctcaaattattattgg 302  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  438696 ttacatttaattacttcaattttcttaaattattattgg 438734  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 14227246 - 14227192
Alignment:
Q  282 attttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtctgtg 336  Q
    ||||||||||||||||||||| ||  | |||| |||| |||||||||||||||||    
T  14227246 attttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtctgtg 14227192  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 11556961 - 11557021
Alignment:
Q  264 ttacatttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgt 324  Q
    ||||||| |||||||| ||||||||||||||||||  || |||||  ||||||||| ||||    
T  11556961 ttacattcaatcacttaaattttctcaaattattacaggtgtctacatgttagtgttgtgt 11557021  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 4323147 - 4323114
Alignment:
Q  266 acatttaatcacttcaattttctcaaattattat 299  Q
    ||||||||||||||||||||||||||||| ||||    
T  4323147 acatttaatcacttcaattttctcaaattgttat 4323114  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 32926315 - 32926352
Alignment:
Q  272 aatcacttcaattttctcaaattattattggcgtctat 309  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  32926315 aatcacttcaattttcttaaattattattggtgtctat 32926352  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 29236300 - 29236264
Alignment:
Q  264 ttacatttaatcacttcaattttctcaaattattatt 300  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  29236300 ttacattcaatcacttctattttctcaaattattatt 29236264  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 32921007 - 32921043
Alignment:
Q  265 tacatttaatcacttcaattttctcaaattattattg 301  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  32921007 tacattaaatcacttcaattttcttaaattattattg 32921043  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 15804118 - 15804154
Alignment:
Q  262 gtttacatttaatcacttcaattttctcaaattatta 298  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  15804118 gtttacattcaatcacttccattttctcaaattatta 15804154  T

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