View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_high_18 (Length: 285)

Name: NF4097_high_18
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_high_18
NF4097_high_18
[»] chr5 (3 HSPs)
chr5 (19-277)||(2327059-2327317)
chr5 (38-202)||(39571541-39571702)
chr5 (33-185)||(4145068-4145220)
[»] chr8 (3 HSPs)
chr8 (22-185)||(9841190-9841353)
chr8 (47-187)||(9902141-9902281)
chr8 (108-181)||(9859636-9859709)
[»] chr3 (2 HSPs)
chr3 (24-171)||(7256058-7256201)
chr3 (91-218)||(49388302-49388429)
[»] chr1 (3 HSPs)
chr1 (41-149)||(5054934-5055042)
chr1 (85-149)||(46445227-46445291)
chr1 (81-205)||(46672868-46672989)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 2327059 - 2327317
Alignment:
Q  19 catggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327059 catggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaac 2327158  T
Q  119 aaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactcttagtactatttgagttttggttcttgttcttcttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327159 aaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactcttagtactatttgagttttggttcttgttcttcttg 2327258  T
Q  219 acttgatgacgtgagttagaatctgaatcacataattgacaactgcatatagtataatc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327259 acttgatgacgtgagttagaatctgaatcacataattgacaactgcatatagtataatc 2327317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 39571702 - 39571541
Alignment:
Q  38 agcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaaagtaaagatatgaaac 137  Q
    |||||||| |||||||| ||||||||| |||||   ||||   ||||| |||| ||||||||  |||| |||||||||||| ||| ||||||||| ||||    
T  39571702 agcaaaatcggagctgcgaatagtagccgcccaagatttgcaaacatatcttgtagagttaattaggctattaagaggaaccaaactaaagatatcaaac 39571603  T
Q  138 ctcaagtcttcaagtagaagcaactttgaaatcattttacaactcttagtactatttgagttttg 202  Q
       || |||||| | || |||||||||||||||| |||||||||||   ||||||||||||||||    
T  39571602 aataaatcttcagggagcagcaactttgaaatcactttacaactct---tactatttgagttttg 39571541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 4145220 - 4145068
Alignment:
Q  33 gcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaaagtaaagatat 132  Q
    ||||| |||||  ||||||||| |||||||| ||||||   ||||   ||||||||||||||||||||||| || |||| ||| | |||| ||| |||||    
T  4145220 gcttcggcaaacagggagctgcgaatagtagtagcccaagatttgcaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggatat 4145121  T
Q  133 gaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactctta 185  Q
     ||||  |||||||||| | |  | |||||||||||||| |||||||||||||    
T  4145120 caaacaccaagtcttcagggattaacaactttgaaatcactttacaactctta 4145068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 9841353 - 9841190
Alignment:
Q  22 ggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaa 121  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||||||  |||||   ||||| ||||||||||||| || |||  |||||||||| ||    
T  9841353 ggcgttcgtatgcttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcagagttaaacaagcaggtaagaggaaccaa 9841254  T
Q  122 agtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactctta 185  Q
    ||||| || |||||||  |||||||||||| || | |||||||||||||| |||||||||||||    
T  9841253 agtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcactttacaactctta 9841190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 9902281 - 9902141
Alignment:
Q  47 ggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaaagtaaagatatgaaacctcaagtct 146  Q
    ||||||| ||||| ||||||||||  |||||   ||||||||||||||||| | ||| |||| ||||||||| ||||||| ||||| |||| ||||||||    
T  9902281 ggagctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtct 9902182  T
Q  147 tcaagtagaagcaactttgaaatcattttacaactcttagt 187  Q
    ||| | || | || ||||||||| | || ||||||||||||    
T  9902181 tcaggaagcaacacctttgaaattacttcacaactcttagt 9902141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 9859709 - 9859636
Alignment:
Q  108 ttaagaggaacaaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaact 181  Q
    |||||||| || ||||||| |||||||||||||||||||||||| ||||  |  ||||||||||||||||||||    
T  9859709 ttaagagggaccaaagtaaggatatgaaacctcaagtcttcaaggagaaaaagttttgaaatcattttacaact 9859636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 7256201 - 7256058
Alignment:
Q  24 cgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaaag 123  Q
    ||||| || |||||||||||||||||||||||||| |||||||||||  |||||   |||||||| ||||||||||| ||    ||||||||| | | ||    
T  7256201 cgttcatacgcttcagcaaaatgggagctgccaattgtagcagcccaaggtttgcaaacatacctcgcagagttaagaag----ttaagaggagccatag 7256106  T
Q  124 taaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatca 171  Q
    | |||||||||||||||||||| |||||||||||||||| ||||||||    
T  7256105 tgaagatatgaaacctcaagtcgtcaagtagaagcaactctgaaatca 7256058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 49388302 - 49388429
Alignment:
Q  91 cagagttaagcaggcaattaagaggaacaaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactcttagtact 190  Q
    ||||||||  |||| ||||||||||||| ||| ||||||||  || |  |||||||||| | ||||||| ||||||||||| |||| |||||| ||||||    
T  49388302 cagagttatacaggaaattaagaggaaccaaaataaagatacaaagcaacaagtcttcagggagaagcagctttgaaatcactttataactctcagtact 49388401  T
Q  191 atttgagttttggttcttgttcttcttg 218  Q
    |||||||||||||||| | |||||||||    
T  49388402 atttgagttttggttcatattcttcttg 49388429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 5054934 - 5055042
Alignment:
Q  41 aaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaaagtaaagatatgaaacctc 140  Q
    |||| |||||||||||||||||||||||||   ||||  ||||||||||| |||||||| |||  | |||| |||||| |||||||||||||||||| ||    
T  5054934 aaaaagggagctgccaatagtagcagcccatgatttgcatacataccttgtagagttaaacagtgagttaataggaaccaaagtaaagatatgaaacatc 5055033  T
Q  141 aagtcttca 149  Q
    |||||||||    
T  5055034 aagtcttca 5055042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 46445291 - 46445227
Alignment:
Q  85 accttgcagagttaagcaggcaattaagaggaacaaaagtaaagatatgaaacctcaagtcttca 149  Q
    ||||||||||||||||||||||  |||||||||| |||||||| | || || | |||||||||||    
T  46445291 accttgcagagttaagcaggcagctaagaggaaccaaagtaaataaataaagcatcaagtcttca 46445227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 46672868 - 46672989
Alignment:
Q  81 acataccttgcagagttaagcaggcaattaagaggaacaaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaac 180  Q
    |||||| ||||||| ||||||||| |  |||||||||| ||||||||||| | ||||  |||||||| | | || |  ||||| ||||| | ||||||||    
T  46672868 acatactttgcagaattaagcaggtatgtaagaggaaccaaagtaaagatgtaaaacaacaagtcttaaggaagcaaaaacttagaaatgagtttacaac 46672967  T
Q  181 tcttagtactatttgagttttggtt 205  Q
    |||   |||||||||||| ||||||    
T  46672968 tct---tactatttgagtgttggtt 46672989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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