View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_high_20 (Length: 284)
Name: NF4097_high_20
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_high_20 |
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| [»] scaffold1528 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 2468189 - 2467914
Alignment:
| Q |
1 |
ctagaaaaatcaaagtatagaaaaatacaaaatgttgtattgtgctcgaacaatttttattgtaagttttcctctagtttgaggcaaaagaattatagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
2468189 |
ctagaaaaatcaaagtatagaaaaatacaaaatgttgtggtgtggtcgaacaatttttattgtaagttttcctctagtttgaggaaaaagaattctaggt |
2468090 |
T |
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| Q |
101 |
ctatgagtcctagggaaatatttaatcaggtatattatagtgaaaaatccttcaagtgtgaaaggactgaagtagttataaattgtggagtaaactaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||| || |
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| T |
2468089 |
ctatgagtcctagggaaatatttaatcaggtatattatagtgaaaaatcctttaagtgtgaaaggactgaagtagctatagattgtggagtgaactagga |
2467990 |
T |
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| Q |
201 |
taatttcatgtgtctttcttcttcccgtatctctttacattttgcactttactttataagtataataagtataatc |
276 |
Q |
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| T |
2467989 |
taattgtatgtgtctttcttcttcccgtatctctttacattttgcactttactttataagtataataagtataatc |
2467914 |
T |
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Target: scaffold1528 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1528
Description:
Target: scaffold1528; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 356 - 443
Alignment:
| Q |
75 |
tagtttgaggcaaaagaattataggactatgagtcctagggaaatatttaatcaggtatattatagtgaaaaatccttcaagtgtgaa |
162 |
Q |
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| T |
356 |
tagtttgaggcaaaagacatctaagactaggtgtcttagtgaaattcgtaatcaggtaaattatagtgaaaagtccttcgagtgtgaa |
443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 17753632 - 17753719
Alignment:
| Q |
75 |
tagtttgaggcaaaagaattataggactatgagtcctagggaaatatttaatcaggtatattatagtgaaaaatccttcaagtgtgaa |
162 |
Q |
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| T |
17753632 |
tagtttgaggcaaaagacatctaagactaggtgtcttagtgaaattcgtaatcaggtaaattatagtgaaaagtccttcgagtgtgaa |
17753719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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