View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_high_28 (Length: 247)

Name: NF4097_high_28
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_high_28
NF4097_high_28
[»] chr5 (8 HSPs)
chr5 (1-230)||(1058637-1058866)
chr5 (5-229)||(1065730-1065954)
chr5 (5-229)||(1071457-1071681)
chr5 (49-230)||(1053372-1053553)
chr5 (23-229)||(1640622-1640828)
chr5 (50-229)||(1044115-1044294)
chr5 (50-228)||(1033729-1033907)
chr5 (62-230)||(1046697-1046865)
[»] chr3 (2 HSPs)
chr3 (170-228)||(44171260-44171318)
chr3 (170-228)||(44191556-44191614)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1058866 - 1058637
Alignment:
Q  1 catcggcacaaggctgtgagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058866 catcggcacaaggctgtgagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggca 1058767  T
Q  101 ttagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058766 ttagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatct 1058667  T
Q  201 catttgcaacagcttcaacaacttccaaaa 230  Q
    ||||||||||||||||||||||||||||||    
T  1058666 catttgcaacagcttcaacaacttccaaaa 1058637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 1065954 - 1065730
Alignment:
Q  5 ggcacaaggctgtgagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattag 104  Q
    |||||||||||||  | ||||||| || |||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||      
T  1065954 ggcacaaggctgtcggggcattcagttttttcaccaacagttttcattcttggttccaccatatgacagtaaagaataccatatttattgagggcattga 1065855  T
Q  105 ccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatt 204  Q
    |||||||||||||||||||  |||| || |||||| ||||||||||||| || | ||||||||||||||| ||||||  ||| ||||| |||||||||||    
T  1065854 ccatataaagtcccaattcattggggttggagtctccacattctgcatactccgcaaaaggtgataatcttattccaactctttctgctcctatctcatt 1065755  T
Q  205 tgcaacagcttcaacaacttccaaa 229  Q
    |||||||||||||||||||||||||    
T  1065754 tgcaacagcttcaacaacttccaaa 1065730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 1071681 - 1071457
Alignment:
Q  5 ggcacaaggctgtgagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattag 104  Q
    |||||||||||||  | ||||||| || |||||  ||||||| ||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||||     
T  1071681 ggcacaaggctgtcggggcattcagttttttcaccaacagttatcattcttggttccaccatgtgacaataaagaataccgtatttattgagggcattaa 1071582  T
Q  105 ccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatt 204  Q
    |||||||||||||||||||| | || || |||||| ||||||||| ||| |||| ||||||||||||||| ||||||  ||| ||||  |||||||||||    
T  1071581 ccatataaagtcccaattctttagggttggagtctccacattctgaatactctgcaaaaggtgataatcttattccaactctttctgttcctatctcatt 1071482  T
Q  205 tgcaacagcttcaacaacttccaaa 229  Q
    |||||||||||||||||||||||||    
T  1071481 tgcaacagcttcaacaacttccaaa 1071457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 1053553 - 1053372
Alignment:
Q  49 cattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattct 148  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||| |||||| |||| |||    
T  1053553 cattcttggttccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctccacaatct 1053454  T
Q  149 gcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaa 230  Q
     || ||| |  ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  1053453 ccaaatttttcaaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaa 1053372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 1640622 - 1640828
Alignment:
Q  23 cattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaatt 122  Q
    ||||||| | ||||| ||| |||||||||||||||||||||||  |||||||||||||||   |||||| ||||||||||| |||||||||| |||||||    
T  1640622 cattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccccaatt 1640721  T
Q  123 ctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaac 222  Q
    ||   ||||| |||||| |||||||| |||||||||  ||||| |||||||||||||||  ||| |||||||||||||||||  |||| ||||||||||     
T  1640722 cttcaggattggagtctccacattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttcaacaat 1640821  T
Q  223 ttccaaa 229  Q
    |||||||    
T  1640822 ttccaaa 1640828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 1044294 - 1044115
Alignment:
Q  50 attcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctg 149  Q
    ||||||||||||||||  |||||||||||||||   || ||||||||||||||| |||||| ||||||||||||  ||||||| |||||| | | |||||    
T  1044294 attcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctg 1044195  T
Q  150 catattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaa 229  Q
    ||||||||| ||||||||||| ||||||||||  | ||||||| |||||||||||  |||| ||||||||||||||||||    
T  1044194 catattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaa 1044115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 1033907 - 1033729
Alignment:
Q  50 attcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctg 149  Q
    ||||||||||||||||  |||||||||||||||   || ||||||||||||||| |||||||||||||||||||| ||||||| ||||||  | ||||||    
T  1033907 attcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctg 1033808  T
Q  150 catattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaa 228  Q
     || ||| | ||||||||||||||||||||||  ||| ||||| |||||||||||  ||||||| ||||||||||||||    
T  1033807 aatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaa 1033729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 230
Target Start/End: Complemental strand, 1046865 - 1046697
Alignment:
Q  62 accacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaa 161  Q
    |||| |||||| || ||||||||||||||||||||||||||| |||| ||||| |||||| |  | ||||| |||||| |||||||| |  | |||||||    
T  1046865 accatatgacaatacagaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaa 1046766  T
Q  162 aaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaa 230  Q
    ||||||||| | | ||||||  ||| || ||||| ||||||||| ||||||||||||||| ||||||||    
T  1046765 aaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaa 1046697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 44171260 - 44171318
Alignment:
Q  170 aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaa 228  Q
    ||||||||||||  | | ||||| |||||||||||  ||||||||||||||||||||||    
T  44171260 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaa 44171318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 44191556 - 44191614
Alignment:
Q  170 aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaa 228  Q
    ||||||||||||  | | ||||| |||||||||||  ||||||||||||||||||||||    
T  44191556 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaa 44191614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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