View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_high_29 (Length: 240)
Name: NF4097_high_29
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1375348 - 1375122
Alignment:
| Q |
1 |
aatatattcggctactcct---gtcacattcaataaaatgtt---agaaatgttatctaattaatatgatggagaaatttt-gtcattttgttaaacaca |
93 |
Q |
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| T |
1375348 |
aatatattcggctactcctcctgtcacattcaataaaatgttgttagaaatgttatcaaattaatatgatggagaaatttttgtcatttt-ttaaacaca |
1375250 |
T |
|
| Q |
94 |
tatacactattaccatggtggttcctaaaacatcaattgacaattttgaatttcaagcaccactctcatattctataagtgtaataattaaaaatttaac |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
1375249 |
tatacactattaccatggtggttcctaaaacatcaattgaaaattttgaatttcaaacaccactgtcatattctataagtgtaataattaaaaattaaac |
1375150 |
T |
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| Q |
194 |
aaagttgtgttacctggaatcacatacg |
221 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1375149 |
aaagttgtgttacctggaatcacatacg |
1375122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1383096 - 1382870
Alignment:
| Q |
1 |
aatatattcggctactcct---gtcacattcaataaaatgtt---agaaatgttatctaattaatatgatggagaaatttt-gtcattttgttaaacaca |
93 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
1383096 |
aatatattcggctactcctcctgtcacattcaataaaatgttgttagaaatgttatcaaattaatatgatggagaaatttttgtcatttt-ttaaacaca |
1382998 |
T |
|
| Q |
94 |
tatacactattaccatggtggttcctaaaacatcaattgacaattttgaatttcaagcaccactctcatattctataagtgtaataattaaaaatttaac |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
1382997 |
tatacactattaccatggtggttcctaaaacatcaattgaaaattttgaatttcaaacaccactgtcatattctataagtgtaataattaaaaattaaac |
1382898 |
T |
|
| Q |
194 |
aaagttgtgttacctggaatcacatacg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
1382897 |
aaagttgtgttacctggaatcacatacg |
1382870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 1372536 - 1372325
Alignment:
| Q |
15 |
ctcctgtcacattcaataaaatgt---tagaaatgttatctaattaata-tgatggagaaattttgt-cattttgttaaacacatatacactattaccat |
109 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||| |
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| T |
1372536 |
ctcctgtcacattcaataaaatgtcgttagaaatgttatctaattaataatgatggagaaattttgttcattttgttacacacatatatactattaccat |
1372437 |
T |
|
| Q |
110 |
ggtggttcctaaaacatcaattgacaattttgaatttcaagcaccactctcatattctataagtgtaataattaaaaatttaacaaagttgtgttacctg |
209 |
Q |
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| T |
1372436 |
ggtggttcctaaaacatcaattgaaaattttgaatttcaaacaccactctcatattctataagtgtaataataaaaaaattaacaaagttgtgttacctg |
1372337 |
T |
|
| Q |
210 |
gaatcacatacg |
221 |
Q |
| |
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|||||||||||| |
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|
| T |
1372336 |
gaatcacatacg |
1372325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 1380284 - 1380073
Alignment:
| Q |
15 |
ctcctgtcacattcaataaaatgt---tagaaatgttatctaattaata-tgatggagaaattttgt-cattttgttaaacacatatacactattaccat |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||| |
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| T |
1380284 |
ctcctgtcacattcaataaaatgtcgttagaaatgttatctaattaataatgatggagaaattttgttcattttgttacacacatatatactattaccat |
1380185 |
T |
|
| Q |
110 |
ggtggttcctaaaacatcaattgacaattttgaatttcaagcaccactctcatattctataagtgtaataattaaaaatttaacaaagttgtgttacctg |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
1380184 |
ggtggttcctaaaacatcaattgaaaattttgaatttcaaacaccactctcatattctataagtgtaataataaaaaaattaacaaagttgtgttacctg |
1380085 |
T |
|
| Q |
210 |
gaatcacatacg |
221 |
Q |
| |
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|||||||||||| |
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|
| T |
1380084 |
gaatcacatacg |
1380073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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