View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_high_3 (Length: 583)
Name: NF4097_high_3
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 31 - 572
Target Start/End: Original strand, 39136104 - 39136645
Alignment:
| Q |
31 |
ccattctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttcta-ttatgaacaaaatttcttgcgtttcctaagcaaaa |
129 |
Q |
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| T |
39136104 |
ccattctcacgataaatctgcagaggtttctgattttatgagaagttttccatgaattcttctgcttatgaacaaaatttcttgcatttcctaagcaaaa |
39136203 |
T |
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| Q |
130 |
gttgtcattgtgctctcatgatcgtaggtgttttggtccatttcacaaaaatgctttgacaacaattagaatatgaaaaattagaataattacttaccta |
229 |
Q |
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| T |
39136204 |
gttgtcattgtgctctcatgatcgtaggtgttttggtccatttcacaaaaatgctttgacaacaattagaatatgaaaaattagaataattacttaccta |
39136303 |
T |
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| Q |
230 |
aattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatttttacctcatccgtacnnnnnnncctttttaaggt |
329 |
Q |
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| T |
39136304 |
aattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatttttacctcatccgtacaaaaaaacctttttaaggt |
39136403 |
T |
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| Q |
330 |
actaaaagtaaatacacattaattgannnnnnnnncaacctcttttcaataatctttctcggacttggttactaaataagtatggttcaattttgtcnnn |
429 |
Q |
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| T |
39136404 |
actaaaagtaaatacacattaattga-ttttttttcaacctcttttcaataatctttctcggacttggttactaaataagtatggttcaattttgtcaaa |
39136502 |
T |
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| Q |
430 |
nnnnnnnngtatggttcgaagagctttaagctgcgaacannnnnnnnnnnnaccatggactttaatcccaaatcatgagcaaagatttaatgagtaacat |
529 |
Q |
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| T |
39136503 |
aaaaaaaagtatggttcaaagagctttaagctgcgaacatttttattttttaccatggactttaatcccaaatcatgagcaaagatttaatgagtaacat |
39136602 |
T |
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| Q |
530 |
tatgtaaagcataataatggtatgaggtgcttgccttgttcat |
572 |
Q |
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| T |
39136603 |
tatgtaaagcataataatggtatgaggtgcttgccttgttcat |
39136645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 39134447 - 39134608
Alignment:
| Q |
18 |
agttatggcatttccattctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattatgaacaaaatttcttgcgtt |
117 |
Q |
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| T |
39134447 |
agttatggcatttccattcttactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattatgaacaaaatttc-tgcatt |
39134545 |
T |
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| Q |
118 |
tcctaagcaaaagttgtcattgtgctctc---atgatcgtaggtgttttggtccatttcacaaa |
178 |
Q |
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| T |
39134546 |
tcctaagtaaaagttttcattgtactctcatgatgatcgtatgtg-tttggtccatttcacaaa |
39134608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 39013649 - 39013472
Alignment:
| Q |
18 |
agttatggcatttccattctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattatgaacaaaatttcttgcgtt |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||| | ||||| |||||||||||| ||||| |||||| || |
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| T |
39013649 |
agttatggaatttccattctcactataaagctgcaatggtttctgattttctgagaagttttccatgaattcttctattatgaataaaatctcttgcatt |
39013550 |
T |
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| Q |
118 |
tcctaagcaaaagttgtcattgtgctctcatgatcgtaggtg--ttttggtccatttcacaaaaatgctttgacaacaa |
194 |
Q |
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| T |
39013549 |
tcctaatcaaaagtttccattgttctctcatgatcgtaggaggtgtttggtccatttcac-aaaatgctttgacaacaa |
39013472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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