View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_high_33 (Length: 236)
Name: NF4097_high_33
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3433725 - 3433946
Alignment:
| Q |
1 |
tggtggacaacaattaagaccactgggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggca |
100 |
Q |
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| T |
3433725 |
tggtggacaacaattaagaccactgggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtctggtgcggatattggagaagctagggca |
3433824 |
T |
|
| Q |
101 |
aaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttag |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433825 |
aaagggttagcggtgaaagtaccacaaagtcctccaaggccaactagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttag |
3433924 |
T |
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| Q |
201 |
ggttgttttggttactattatt |
222 |
Q |
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||||||||||||||| |||||| |
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| T |
3433925 |
ggttgttttggttaccattatt |
3433946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3427534 - 3427755
Alignment:
| Q |
1 |
tggtggacaacaattaagaccactgggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggca |
100 |
Q |
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||||||||||||||||| | | ||||| |||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3427534 |
tggtggacaacaattaatattgtttggtgttgcacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggca |
3427633 |
T |
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| Q |
101 |
aaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttag |
200 |
Q |
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| T |
3427634 |
aaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggttcttgttcctctttag |
3427733 |
T |
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| Q |
201 |
ggttgttttggttactattatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3427734 |
ggttgttttggttactattatt |
3427755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 11912023 - 11911827
Alignment:
| Q |
26 |
ggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccac |
125 |
Q |
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||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11912023 |
ggtgttgcacctaagggtagatccggtggaccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccac |
11911924 |
T |
|
| Q |
126 |
aaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttagggttgttttggttactattatt |
222 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |
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| T |
11911923 |
aaagtcctccaaggccaattagaacatttctcctatttcctacaacaatgttttgtagttcttgttcttctttagggttgttttggttactaatatt |
11911827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 11896691 - 11896527
Alignment:
| Q |
58 |
acatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctc |
157 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11896691 |
acatttagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacatttctc |
11896592 |
T |
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| Q |
158 |
ctatttcctacaacaatgttttgtagttgttcttcttctttagggttgttttggttactattatt |
222 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |
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| T |
11896591 |
ctatttcctacaacaatgttttgtagttcttgttcttctttagggttgttttggttactaatatt |
11896527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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