View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_high_34 (Length: 227)

Name: NF4097_high_34
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_high_34
NF4097_high_34
[»] chr1 (2 HSPs)
chr1 (128-227)||(47295463-47295562)
chr1 (190-227)||(11751442-11751479)
[»] chr6 (2 HSPs)
chr6 (41-111)||(19840215-19840285)
chr6 (175-227)||(33248321-33248373)
[»] chr5 (2 HSPs)
chr5 (41-111)||(11830846-11830916)
chr5 (190-227)||(28023028-28023065)
[»] chr2 (1 HSPs)
chr2 (41-114)||(1263499-1263573)
[»] chr4 (1 HSPs)
chr4 (175-227)||(11432249-11432301)
[»] chr7 (2 HSPs)
chr7 (175-225)||(29707012-29707062)
chr7 (175-227)||(28031783-28031835)
[»] chr8 (1 HSPs)
chr8 (175-227)||(44652361-44652413)
[»] chr3 (1 HSPs)
chr3 (191-227)||(20601851-20601887)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 47295463 - 47295562
Alignment:
Q  128 ataagagactcatacaagaaccaaccattgaaaaaacgaattattataaaagcctcctaggcatattaggtcggcatattgaagtaaatatgaataatat 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47295463 ataagagactcatacaagaaccgaccattgaaaaaacgaattattataaaagcctcttaggcatattaggtcggcatattgaagtaaatatgaataatat 47295562  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 11751442 - 11751479
Alignment:
Q  190 atattaggtcggcatattgaagtaaatatgaataatat 227  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  11751442 atattagatcggcatatttaagtaaatatgaataatat 11751479  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 19840285 - 19840215
Alignment:
Q  41 ctaaccttgaccatttcagttcatttgtcaacaacaagaggttaaatgtccttgcatcatcaatctttcaa 111  Q
    |||||||||||||||| ||||| ||||||||||||||||| || ||| ||||| ||||| |||||||||||    
T  19840285 ctaaccttgaccattttagttcctttgtcaacaacaagagcttgaatatcctttcatcaccaatctttcaa 19840215  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 33248373 - 33248321
Alignment:
Q  175 aaaagcctcctaggcatattaggtcggcatattgaagtaaatatgaataatat 227  Q
    ||||||||| ||||| |||||||||| | |||| |||||||||||||||||||    
T  33248373 aaaagcctcttaggcctattaggtcgacctatttaagtaaatatgaataatat 33248321  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 11830916 - 11830846
Alignment:
Q  41 ctaaccttgaccatttcagttcatttgtcaacaacaagaggttaaatgtccttgcatcatcaatctttcaa 111  Q
    |||||||||||||||| ||||| ||||||||||||||||| || |||||||||  |||| |||||||||||    
T  11830916 ctaaccttgaccattttagttcctttgtcaacaacaagagcttgaatgtcctttaatcaccaatctttcaa 11830846  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 28023065 - 28023028
Alignment:
Q  190 atattaggtcggcatattgaagtaaatatgaataatat 227  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  28023065 atattaggtcgacatatttaagtaaatatgaataatat 28023028  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 1263499 - 1263573
Alignment:
Q  41 ctaaccttgaccatttcagttcatttgtcaacaacaagaggttaaatgtcct-tgcatcatcaatctttcaaaac 114  Q
    ||||||||||||||| ||||||  ||||||||||||||||||| ||||||||  |||||| | ||||||||||||    
T  1263499 ctaaccttgaccattccagttccattgtcaacaacaagaggttgaatgtcctcagcatcagccatctttcaaaac 1263573  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 11432249 - 11432301
Alignment:
Q  175 aaaagcctcctaggcatattaggtcggcatattgaagtaaatatgaataatat 227  Q
    ||||||||| ||||| |||||||||||| |||| |||||||||||||||||||    
T  11432249 aaaagcctcttaggcctattaggtcggcctatttaagtaaatatgaataatat 11432301  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 29707062 - 29707012
Alignment:
Q  175 aaaagcctcctaggcatattaggtcggcatattgaagtaaatatgaataat 225  Q
    ||||||||| ||||| |||||||||||| |||| |||||||||||||||||    
T  29707062 aaaagcctcttaggcctattaggtcggcctatttaagtaaatatgaataat 29707012  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 28031783 - 28031835
Alignment:
Q  175 aaaagcctcctaggcatattaggtcggcatattgaagtaaatatgaataatat 227  Q
    ||||||||| ||||| || |||| |||| |||| |||||||||||||||||||    
T  28031783 aaaagcctcttaggcctactaggccggcctatttaagtaaatatgaataatat 28031835  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 44652361 - 44652413
Alignment:
Q  175 aaaagcctcctaggcatattaggtcggcatattgaagtaaatatgaataatat 227  Q
    ||||||||| ||||| ||||||| |||| |||| |||||||||||||||||||    
T  44652361 aaaagcctcttaggcctattaggccggcctatttaagtaaatatgaataatat 44652413  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 20601887 - 20601851
Alignment:
Q  191 tattaggtcggcatattgaagtaaatatgaataatat 227  Q
    |||||||||||| |||| |||||||||||||||||||    
T  20601887 tattaggtcggcctatttaagtaaatatgaataatat 20601851  T

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