View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_high_35 (Length: 227)

Name: NF4097_high_35
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_high_35
NF4097_high_35
[»] chr1 (2 HSPs)
chr1 (62-227)||(4388330-4388494)
chr1 (1-42)||(4388513-4388554)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 4388494 - 4388330
Alignment:
Q  62 ctaaatgcctaaataagtcttatttttattaagattcatttaaatatttacttttcctaaacaagtaacatactaacagtagaaatatgggtcagatttt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  4388494 ctaaatgcctaaataagtcttatttttattaagattcatttaaatatttacttttcctaaacaagtaacatattaagagtagaaatatgggtcagatttt 4388395  T
Q  162 gctaagctttgcgtaaagaggtgnnnnnnnnnaagggttgagtaaataggtatcgtaaaatgactt 227  Q
    ||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||||    
T  4388394 gctaagctttgcgtaaataggtg-tcttttttaagggttgagtaaataggtatcgtaaaatgactt 4388330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4388554 - 4388513
Alignment:
Q  1 tgttttcaatgatatgaaaacatgttaatgaaagaagaccaa 42  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  4388554 tgtttttaatgatatgaaaacatgtgaatgaaagaagaccaa 4388513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University