View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_high_36 (Length: 225)

Name: NF4097_high_36
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_high_36
NF4097_high_36
[»] chr4 (10 HSPs)
chr4 (17-207)||(3461202-3461390)
chr4 (20-207)||(11652452-11652639)
chr4 (127-207)||(49106589-49106669)
chr4 (127-207)||(49108693-49108773)
chr4 (151-207)||(50077259-50077315)
chr4 (161-207)||(26984727-26984773)
chr4 (161-207)||(26998800-26998846)
chr4 (161-207)||(48205832-48205878)
chr4 (167-206)||(26982549-26982588)
chr4 (165-201)||(34481155-34481191)
[»] chr8 (12 HSPs)
chr8 (20-207)||(41841212-41841399)
chr8 (153-207)||(40054305-40054359)
chr8 (157-207)||(44878980-44879030)
chr8 (157-207)||(44880891-44880941)
chr8 (83-203)||(42220909-42221028)
chr8 (156-207)||(10944459-10944510)
chr8 (162-207)||(37679757-37679802)
chr8 (160-207)||(37682057-37682104)
chr8 (83-206)||(42555144-42555267)
chr8 (157-203)||(42872514-42872560)
chr8 (84-207)||(42091945-42092067)
chr8 (177-207)||(44582870-44582900)
[»] chr2 (20 HSPs)
chr2 (20-207)||(2841077-2841265)
chr2 (84-207)||(9020771-9020894)
chr2 (104-207)||(8973256-8973359)
chr2 (84-207)||(9023371-9023494)
chr2 (84-207)||(9026710-9026833)
chr2 (84-207)||(8984617-8984740)
chr2 (85-207)||(9016418-9016540)
chr2 (151-207)||(8979313-8979369)
chr2 (103-207)||(9031996-9032100)
chr2 (151-207)||(30731999-30732055)
chr2 (157-207)||(9008018-9008068)
chr2 (157-207)||(32918077-32918127)
chr2 (157-207)||(43850046-43850096)
chr2 (83-207)||(8988378-8988502)
chr2 (103-207)||(8992091-8992195)
chr2 (84-207)||(9030322-9030445)
chr2 (156-207)||(30733984-30734035)
chr2 (162-207)||(19232459-19232504)
chr2 (163-198)||(39814115-39814150)
chr2 (167-207)||(10763938-10763978)
[»] chr5 (4 HSPs)
chr5 (83-207)||(1716512-1716635)
chr5 (111-207)||(3643591-3643687)
chr5 (160-207)||(7524968-7525015)
chr5 (164-207)||(4103249-4103292)
[»] chr1 (20 HSPs)
chr1 (84-207)||(33987994-33988117)
chr1 (150-207)||(28366259-28366316)
chr1 (151-207)||(14654400-14654456)
chr1 (151-207)||(14664191-14664247)
chr1 (151-207)||(14669769-14669825)
chr1 (151-207)||(14706079-14706135)
chr1 (151-207)||(14708569-14708625)
chr1 (151-207)||(14716282-14716338)
chr1 (156-207)||(14667171-14667222)
chr1 (157-207)||(14674478-14674528)
chr1 (157-207)||(14676629-14676679)
chr1 (157-207)||(14679856-14679906)
chr1 (157-207)||(14683747-14683797)
chr1 (157-207)||(38175590-38175640)
chr1 (160-207)||(14652525-14652572)
chr1 (160-207)||(14662316-14662363)
chr1 (157-207)||(14681596-14681646)
chr1 (163-207)||(11872541-11872585)
chr1 (166-207)||(37422175-37422216)
chr1 (157-201)||(28698550-28698594)
[»] chr6 (4 HSPs)
chr6 (151-207)||(10791712-10791768)
chr6 (151-207)||(10795950-10796006)
chr6 (160-207)||(30521242-30521289)
chr6 (162-207)||(8875691-8875736)
[»] chr3 (1 HSPs)
chr3 (162-207)||(15758563-15758608)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 3461390 - 3461202
Alignment:
Q  17 aagttggtctctgttggctatgccatgcgtgcaaaaactagagagtcccaagttgttgtctaagtttagtcccacatcgcttgtggaagaaagcaagtga 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461390 aagttggtctctgttggctatgccatgcgtgcaagaactagag--tcccaagttgttgtctaagtttagtcccacatcgcttgtggaagaaagcaagtga 3461293  T
Q  117 gtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461292 gtggatgggagatataaaaccataagcgagcatctctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 3461202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 11652639 - 11652452
Alignment:
Q  20 ttggtctctgttggctatgccatgcgtgcaaaaactagagagtcccaagttgttgtctaagtttagtcccacatcgcttgtggaagaaagcaagtgagtg 119  Q
    ||||||||||||||||||||||||||| ||| ||| |  ||||| ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  11652639 ttggtctctgttggctatgccatgcgtacaagaaccattgagtcacaagttgttgtctaagtttagtcccacatcgctcgtttaagaaagcaagtgagtg 11652540  T
Q  120 gatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||| |||||||||||||| |||| | |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652539 gatgtgagatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 11652452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 49106669 - 49106589
Alignment:
Q  127 gatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||| || |||| |||  | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106669 gatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 49106589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 49108773 - 49108693
Alignment:
Q  127 gatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||| || |||| ||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108773 gatataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 49108693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 50077315 - 50077259
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 50077259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 26984773 - 26984727
Alignment:
Q  161 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 26984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 26998846 - 26998800
Alignment:
Q  161 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 26998800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 48205832 - 48205878
Alignment:
Q  161 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttc 48205878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  167 tttctcggccttttggctaagatcaagtgtagtatctgtt 206  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  165 cctttctcggccttttggctaagatcaagtgtagtat 201  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 41841399 - 41841212
Alignment:
Q  20 ttggtctctgttggctatgccatgcgtgcaaaaactagagagtcccaagttgttgtctaagtttagtcccacatcgcttgtggaagaaagcaagtgagtg 119  Q
    ||||||||||||||| ||||||||||| ||| ||| |  ||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  41841399 ttggtctctgttggccatgccatgcgtacaagaaccattgagtcccaagttgttgtctaagtttagtcccacatcgctcgtttaagaaagcaagtgagtg 41841300  T
Q  120 gatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||| ||||||||||| || |||| | |   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841299 gatgtgagatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 41841212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 40054305 - 40054359
Alignment:
Q  153 ttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40054305 ttttaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 40054359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 44878980 - 44879030
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878980 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 44879030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 44880941 - 44880891
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880941 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 44880891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 42221028 - 42220909
Alignment:
Q  83 tagtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttgg 182  Q
    ||||||||||||||| ||   |||||| ||||| ||||||  ||||||||||| || | ||||||||  |||| ||||||||| ||| |||| |||||||    
T  42221028 tagtcccacatcgctagttctagaaagtaagtg-gtggatatgagatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttgg 42220930  T
Q  183 ctaagatcaagtgtagtatct 203  Q
    |||||||||||||||||||||    
T  42220929 ctaagatcaagtgtagtatct 42220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 10944510 - 10944459
Alignment:
Q  156 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10944510 taactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttc 10944459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 37679757 - 37679802
Alignment:
Q  162 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 37679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 37682057 - 37682104
Alignment:
Q  160 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttc 37682104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 42555267 - 42555144
Alignment:
Q  83 tagtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttgg 182  Q
    ||||||||||||| | ||  ||||||||||||||||||||| || ||||||||||  |||  |||    |||| ||||||||||||||| |  |||||||    
T  42555267 tagtcccacatcgatagtttaagaaagcaagtgagtggatgtgatatataaaacctgaaggtagctcaactttcaactcatacctttcttgatcttttgg 42555168  T
Q  183 ctaagatcaagtgtagtatctgtt 206  Q
    ||||||||||||| || |||||||    
T  42555167 ctaagatcaagtgcagaatctgtt 42555144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 42872560 - 42872514
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatct 203  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872560 aactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 42091945 - 42092067
Alignment:
Q  84 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggc 183  Q
    |||||||||||| | ||  |||||||||| ||||||||   |||||||||||||| |||| | |   ||||| |||||||||||||||  ||||||| ||    
T  42091945 agtcccacatcggtagttcaagaaagcaactgagtggacctgagatataaaaccagaagcaaactcatctttaaactcatacctttctttgcctttt-gc 42092043  T
Q  184 taagatcaagtgtagtatctgttc 207  Q
    ||| || ||||||| ||| |||||    
T  42092044 taaaattaagtgtaatatttgttc 42092067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 44582870 - 44582900
Alignment:
Q  177 ttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttc 44582900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 2841265 - 2841077
Alignment:
Q  20 ttggtctctgttggctatgccatgcgtgcaaaaactagagagtcccaagttgttgtctaagtttagtcccacatcgcttgtggaagaaagcaagtgagtg 119  Q
    ||||||| ||||||| ||||||||||| ||| |||  | |||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  2841265 ttggtctttgttggccatgccatgcgtacaagaacaggcgagtcccaagttattgtttaagtttagtcccacatcggttgttgaagaaagcaagtgagtg 2841166  T
Q  120 gatgggagatataaaaccataagcgagcatctcttttaa--ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||| ||||||||||| || | ||||||  || ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841165 gatgtgagatataaaagcagacgcgagcccct-ttttaactctcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 2841077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 9020771 - 9020894
Alignment:
Q  84 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggc 183  Q
    ||||| |||||| ||||  | |||||||||||| |||||| || |||||||||||||||||||    ||||| || |||||| |||||||||||||||||    
T  9020771 agtcctacatcggttgttcatgaaagcaagtgaatggatgtgatatataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggc 9020870  T
Q  184 taagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||    
T  9020871 taagatcaagtgtagtatctgttc 9020894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 8973256 - 8973359
Alignment:
Q  104 agaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 203  Q
    |||||| ||||||  ||||| || |||||||| ||||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8973256 agaaagtaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 8973355  T
Q  204 gttc 207  Q
    ||||    
T  8973356 gttc 8973359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 9023371 - 9023494
Alignment:
Q  84 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggc 183  Q
    |||||||||||| ||||  |||||| |||||||   |||| || |||||||| ||||||||||     |||| |||||||||||||||||||||||||||    
T  9023371 agtcccacatcggttgttcaagaaatcaagtgaagagatgtgatatataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggc 9023470  T
Q  184 taagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||    
T  9023471 taagatcaagtgtagtatctgttc 9023494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 9026710 - 9026833
Alignment:
Q  84 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggc 183  Q
    ||||||| |||| ||||  ||||||||||||||  ||||| |  |||||||| |||||||||     ||||| |||||||||||||||||||||||||||    
T  9026710 agtcccatatcggttgttcaagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggc 9026809  T
Q  184 taagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||    
T  9026810 taagatcaagtgtagtatctgttc 9026833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 8984617 - 8984740
Alignment:
Q  84 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggc 183  Q
    |||||||||||| ||||  |||||| |||||||  ||||| || |||||||| ||||||| ||    | ||| |||||||||||||||||||||||||||    
T  8984617 agtcccacatcggttgttcaagaaaacaagtgaagggatgtgatatataaaagcataagcaagttcatatttcaactcatacctttctcggccttttggc 8984716  T
Q  184 taagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||| |||||    
T  8984717 taagatcaagtgtagtatttgttc 8984740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 9016418 - 9016540
Alignment:
Q  85 gtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggct 184  Q
    ||||||||||  ||||  ||||||||||||||  ||||| || |||||||| ||||||||||    ||||||||||||||||||  ||| ||||||||||    
T  9016418 gtcccacatcagttgttcaagaaagcaagtgaaaggatgtgatatataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggct 9016517  T
Q  185 aagatcaagtgtagtatctgttc 207  Q
    |||||||| ||||||||||||||    
T  9016518 aagatcaaatgtagtatctgttc 9016540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 8979313 - 8979369
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979313 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 8979369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 9031996 - 9032100
Alignment:
Q  103 aagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatc 202  Q
    ||||||||||||||  ||||| |  |||||||| |||||||||     ||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9031996 aagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatc 9032095  T
Q  203 tgttc 207  Q
    |||||    
T  9032096 tgttc 9032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 30731999 - 30732055
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731999 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 30732055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 9008018 - 9008068
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9008068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 32918077 - 32918127
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918077 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 32918127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 43850046 - 43850096
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850046 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 43850096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 8988378 - 8988502
Alignment:
Q  83 tagtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttgg 182  Q
    |||||||||||||  |||  ||||||||||||||  ||||| || |||||||| ||||||||||    ||||| |||| ||||| |||| ||||||||||    
T  8988378 tagtcccacatcgactgttcaagaaagcaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaacttataccattcttggccttttgg 8988477  T
Q  183 ctaagatcaagtgtagtatctgttc 207  Q
    | ||||||||||||||||| |||||    
T  8988478 cgaagatcaagtgtagtatttgttc 8988502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 8992091 - 8992195
Alignment:
Q  103 aagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatc 202  Q
    ||||||| ||||||  ||||| || |||||||| ||||||||||    ||||||||||||| |||||||| | ||||||||||||||||||||||||||     
T  8992091 aagaaagtaagtgaagggatgtgatatataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtata 8992190  T
Q  203 tgttc 207  Q
    |||||    
T  8992191 tgttc 8992195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 9030322 - 9030445
Alignment:
Q  84 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggc 183  Q
    ||||||||||||  |||  ||||| ||||||||  ||||| || |||||||| ||||||| ||    ||||| ||||||||  ||||| |||||||||||    
T  9030322 agtcccacatcgactgttcaagaatgcaagtgaagggatgtgatatataaaagcataagcaagttcatctttcaactcatatttttcttggccttttggc 9030421  T
Q  184 taagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||    
T  9030422 taagatcaagtgtagtatctgttc 9030445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 30733984 - 30734035
Alignment:
Q  156 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30733984 taacttatacctttctcggccttttggctaagatcaagtgtagtatctgttc 30734035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 19232504 - 19232459
Alignment:
Q  162 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttc 19232459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  163 tacctttctcggccttttggctaagatcaagtgtag 198  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 10763978 - 10763938
Alignment:
Q  167 tttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||| |||||| ||||||||||||||||||| |||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttc 10763938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 1716635 - 1716512
Alignment:
Q  83 tagtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttgg 182  Q
    ||||||||||||||| ||  | ||||||||||||||||||| |||||||||||  | |||||||    ||||||||||||||||||||||||||||||||    
T  1716635 tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttgg 1716537  T
Q  183 ctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||    
T  1716536 ctaagatcaagtgtagtatctgttc 1716512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 3643591 - 3643687
Alignment:
Q  111 aagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||| | ||||||||| || |||||||  |  |||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643591 aagtgagtggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 3643687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 7524968 - 7525015
Alignment:
Q  160 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524968 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 7525015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 4103249 - 4103292
Alignment:
Q  164 acctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||| || |||||| ||||||||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttc 4103292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 33987994 - 33988117
Alignment:
Q  84 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctcttttaactcatacctttctcggccttttggc 183  Q
    |||||||||||| ||||  ||||||||||||||  ||| | || |||||||| |||||| |||    ||||| |||||||||||||||||||||||||||    
T  33987994 agtcccacatcggttgttcaagaaagcaagtgaagggaggtgatatataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggc 33988093  T
Q  184 taagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||    
T  33988094 taagatcaagtgtagtatctgttc 33988117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 28366316 - 28366259
Alignment:
Q  150 ctcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366316 ctctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 28366259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 14654456 - 14654400
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654456 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14654400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 14664247 - 14664191
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664247 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 14669825 - 14669769
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669825 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14669769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 14706079 - 14706135
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706079 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14706135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 14708569 - 14708625
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708569 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14708625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 14716282 - 14716338
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716282 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14716338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 14667222 - 14667171
Alignment:
Q  156 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667222 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14667171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 14674478 - 14674528
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674478 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14674528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 14676629 - 14676679
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676629 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14676679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 14679856 - 14679906
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679856 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14679906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 14683747 - 14683797
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683747 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14683797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 38175640 - 38175590
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175640 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 38175590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 14652525 - 14652572
Alignment:
Q  160 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14652572  T

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Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 14662316 - 14662363
Alignment:
Q  160 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14662363  T

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Target: chr1; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 14681596 - 14681646
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14681596 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14681646  T

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Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 11872585 - 11872541
Alignment:
Q  163 tacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttc 11872541  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 37422175 - 37422216
Alignment:
Q  166 ctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttc 37422216  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 28698550 - 28698594
Alignment:
Q  157 aactcatacctttctcggccttttggctaagatcaagtgtagtat 201  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||    
T  28698550 aactcatacatttctcggtcttttggctaagatcaaatgtagtat 28698594  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 10791768 - 10791712
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 10791712  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 10796006 - 10795950
Alignment:
Q  151 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10796006 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 10795950  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 30521242 - 30521289
Alignment:
Q  160 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttc 30521289  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 8875691 - 8875736
Alignment:
Q  162 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttc 8875736  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 15758608 - 15758563
Alignment:
Q  162 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 207  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttc 15758563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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