View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_high_39 (Length: 210)

Name: NF4097_high_39
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_high_39
NF4097_high_39
[»] chr2 (1 HSPs)
chr2 (15-196)||(19495967-19496148)
[»] scaffold0363 (1 HSPs)
scaffold0363 (55-164)||(15499-15608)
[»] chr8 (7 HSPs)
chr8 (63-164)||(13164380-13164481)
chr8 (55-164)||(14403245-14403354)
chr8 (55-161)||(5568675-5568781)
chr8 (55-156)||(5562348-5562449)
chr8 (55-163)||(5624537-5624645)
chr8 (55-162)||(5598440-5598547)
chr8 (55-162)||(5636728-5636835)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 19496148 - 19495967
Alignment:
Q  15 cacagactaccgcatcaaaagtggaaaaaatatttgggacgaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactac 114  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19496148 cacagactaccgcatcaaaagtggaaaaaaaatctgggacgaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactac 19496049  T
Q  115 gcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtggacaggttgttgttcttcctg 196  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  19496048 gcggattccagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtagacaagttgttgttcttcctg 19495967  T

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Target: scaffold0363 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 15608 - 15499
Alignment:
Q  55 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 154  Q
    |||||||| |||||||| ||  |||| ||||||||||| || |||||||| ||||||||||||  ||| |  ||||||||| | ||||| ||||||||||    
T  15608 gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa 15509  T
Q  155 tgaagtgtag 164  Q
    || |||||||    
T  15508 tggagtgtag 15499  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 13164380 - 13164481
Alignment:
Q  63 gaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgt 162  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||||||||||   ||| |  ||||||||| | ||||| ||| |||||||| |||||    
T  13164380 gaaagcaatcaatgaatccactctttttcttgtcgtgttctcagagaactacgcattttcaacatggtgtttgaacgaactagttcaaataatggagtgt 13164479  T
Q  163 ag 164  Q
    ||    
T  13164480 ag 13164481  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 14403245 - 14403354
Alignment:
Q  55 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 154  Q
    |||||||| |||||||| ||  |||| ||||||||||| || |||||||| ||||||||||||  ||| |  ||||||||| | ||||| ||||||||||    
T  14403245 gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa 14403344  T
Q  155 tgaagtgtag 164  Q
    || |||||||    
T  14403345 tggagtgtag 14403354  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 5568675 - 5568781
Alignment:
Q  55 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 154  Q
    ||||||| ||||||||| ||  |||||||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| |||||||||||||| |||    
T  5568675 gaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacatggtgtttgaatgaacttgttgaactaa 5568774  T
Q  155 tgaagtg 161  Q
    || ||||    
T  5568775 tggagtg 5568781  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 5562348 - 5562449
Alignment:
Q  55 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 154  Q
    ||||||||||| ||||||||  |||| ||| | ||||| || |||||||| ||||||||||||  ||| |  ||||||||| ||||||| ||| ||||||    
T  5562348 gaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcggagaactacgcgtcttcaacatggtgtttgaatgaactcgttcaaataa 5562447  T
Q  155 tg 156  Q
    ||    
T  5562448 tg 5562449  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 5624537 - 5624645
Alignment:
Q  55 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 154  Q
    ||||||||||||||||| ||  |||| ||||| | ||| ||||||||||| ||||||||||||   || |  ||||||||| | ||||| ||| ||||||    
T  5624537 gaacttgtgaaagcaatcaaacaatccactctgtatcttgtggtgttctcggagaactacgcgtcatcaacatggtgtttgaacgaactcgttcaaataa 5624636  T
Q  155 tgaagtgta 163  Q
    || ||||||    
T  5624637 tggagtgta 5624645  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 5598547 - 5598440
Alignment:
Q  55 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 154  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| | ||||| ||| ||||||    
T  5598547 gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa 5598448  T
Q  155 tgaagtgt 162  Q
    || |||||    
T  5598447 tggagtgt 5598440  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 5636728 - 5636835
Alignment:
Q  55 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 154  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| | ||||| ||| ||||||    
T  5636728 gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa 5636827  T
Q  155 tgaagtgt 162  Q
    || |||||    
T  5636828 tggagtgt 5636835  T

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